Publications scientifiques
Articles dans des revues internationales ou nationales avec comité de lecture répertoriés par les bases de données (ACL)
PRODUCTION SCIENTIFIQUE DE L'UMR 5119 (janvier 2005-décembre 2011)
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2011
Abadi Z. T. R., Khodabandeh S., Abtahi B., Charmantier G., & Charmantier-Daures M. (2011 ) Ultrastructure and osmoregulatory function of the kidney in larvae of the Persian Sturgeon, Acipenser persicus. J. Fish Biol. (in press).
Albouy C, Guilhaumon F, Villéger S, Mouchet M, Mercier L, Culioli JM, Tomasini JA, Le Loc'h F and Mouillot D (2011)-Predicting trophic guild and diet overlap from functional traits:statistics, opportunities, and limitations for marine ecology -Marine Ecology Progress Series 436 : 17-28.
Aujoulat F, Jumas-Bilak E, Masnou A, Salle F, Faure D, Segonds C, Marchandin H, Teyssier C (2011). Multilocus Sequence-Based Analysis Delineates a Clonal Population of Agrobacterium (Rhizobium) radiobacter (Agrobacterium tumefaciens) of Human Origin. J. Bacteriol 193(10) 2608-2618
Aujoulat F, Lebreton F, Romano S, Delage M, Marchandin H, Brabet M, Bricard F, Godreuil S, Parer S, Jumas-Bilak E. (2011). Comparative diffusion assay to assess efficacy of topical antimicrobial agents against Pseudomonas aeruginosa in burns care. Annals of clinical microbiology and antimicrobials, 10 :27 doi:10.1186/1476-0711-10-27
Aujoulat F, Roger F, Bourdier A, Lotthe A, Lamy B, Marchandin H and Jumas-Bilak E. (2011). From environment to man: genome evolution and adaptation of opportunistic human pathogens. Genes. In Press
Baklouti M., Chevalier C., Bouvy M., Corbin D., Pagano M., Troussellier M., Arfi R. (2011) A study of plankton dynamics under osmotic stress in the Senegal River Estuary, West Africa, using a 3D mechanistic model. Ecological Modelling 222: 2704-2721.
Bec B, Collos Y, Souchu P, Vaquer A, Lautier J, Fiandrino A, Benau L, Orsoni V and Laugier T (2011)-Distribution of picophytoplankton and nanophytoplankton along an anthropogenic eutrophication gradient in French Mediterranean coastal lagoons-Aquatic Microbial Ecology-63: 29-45.
Bettarel Y., Bouvier T., Agis M., Bouvier C., Chu Van Thuoc, Combe M., Mari X., Minh Nghiem Ngoc, Nguyen Thanh Thuy, Pham The, Thu, Pringault O., Rochelle-Newall E., Torréton J-P., TranQuang Huy (2011) Viral distribution and life strategies in the Bach Dang estuary, Vietnam. Microbial Ecology, 62:143-154.
Bettarel Y., Bouvier T., Bouvier C., Carre C., Desnues A., Domaizon I., Jacquet S., Robin A., Sime-Ngando T. (2011) Ecological traits of planktonic viruses and prokaryotes along a full salinity gradient. FEMS Microbiology Ecology, 76:360-372.
Boissin E., Hoareau T.B., Berrebi P. (2011). Effects of current and historic habitat fragmentation on the genetic structure of the sand goby Pomatoschistus minutus (Osteichthys, Gobiidae). Biological Journal of the Linnean Society, 102 : 175-198.
Bonami J.R., Widada J.-Sri. (2011). Viral diseases of the giant fresh water prawn Macrobrachium rosenbergii: A review . Journal of Invertebrate Pathology, 106: 131-142.
Bonami J.-R., Zhang S. (2011). Viral diseases in commercially exploited crabs: A review. Journal of Invertebrate Pathology, 106: 6-17.
Bossus M., Charmantier G., Lorin-Nebel C. (2011) - Transient receptor potential vanilloid 4 in the European sea bass Dicentrarchus labrax: A candidate protein for osmosensing. Comp. Biochem. Physiol. A 160: 43–51.
Boukef I., El Bour M., Al Gallas N., El Bahri O., Mejri S., Mraouna R., Ben Aissa R., Boudabous A., Got P.,Troussellier M. (2011) Survival of Escherichia coli Strains in Mediterranean Brackish Water in the Bizerte Lagoon in Northern Tunisia. Water Environment Research 82: 2249-2257.
Bouvier T., Maurice C.F. (2011) A single-cell analysis of virioplankton adsorption, infection and intracellular abundance in different bacterioplankton physiologic categories. Microbial Ecology, 62:669-678.
Bouvy M., Bettarel Y, Bouvier C, Domaizon I, Jacquet S, Le Floc'h E, Montanié H, Mostajir B, Sime-Ngando T, Torréton J-P, Vidussi F, Bouvier T (2011) Trophic interactions between viruses, bacteria and nanoflagellates under various nutrient conditions and simulated climate change. Environmental Microbiology, 13: 1842-1857.
Brehmer P, Do Chi T, Laugier T, Galgani F, Laloë F, Darnaude AM, Fiandrino A, Mouillot D (2011). Field investigations and multi-indicators for shallow water lagoon management: conservation, practice and perspective. Aquatic Conservation: Marine and Freshwaters Ecosystems 7: 728-742
Chahinian N., Bancon-Montigny C., Caro A., Got P., Perrin J.L., Rosain D., Rodier C., Picot B., Tournoud M.G. (2011) The role of river sediments in contamination storage downstream of a waste water treatment plant in low flow conditions: organotins, faecal indicator bacteria and nutrients. Estuarine Coastal and Shelf Science doi : 10.1016/j.ecss.2011.09.007
Chambouvet A, Laabir M, Sengco M, Vaquer A and Guillou L (2011)- Genetic diversity of Amoebophryidae (Syndiniales) during the spring and fall Alexandrium catenella/tamarense (Dinophyceae) blooms in Thau lagoon (Mediterranean Sea, France). Research in Microbiology- 162(9): 959-968.
Charmantier G., Anger K., 2011 - Ontogeny of osmoregulatory patterns in the South American shrimp Macrobrachium amazonicum: loss of hypo-regulation in a land-locked population indicates phylogenetic separation from estuarine ancestor. J. Exp. Mar. Biol. Ecol. 396 : 89-98.
Chu Y., Salles C., Tournaud M.G., Got P., Troussellier M., Rodier C., Caro A. (2011). Faecal bacterial loads during flood events in Northwestern Mediterranean coastal rivers. J. of Hydrology 405, 501-511.
Coeurdacier J.L., Dutto G., Gasset E., Blancheton J-P. (2011). Is total serum protein a good indicator for welfare in reared sea bass (Dicentrarchus labrax)? Aquatic Living Resources, 24(2), 121-127.
Collos, Y., Hadjadji, I., Plisson, B., Cecchi, P., Laabir, M., Bechemin, C., Masseret, E. (2011). Phased oscillations in cell numbers and nitrate in batch cultures of Alexandrium tamarense (Dinophyceae). J. Phycol. 47: 1057-1062.
Condon RH, Steinberg D.K., del Giorgio P.A., Bouvier T., Bronk D.A., Grahamb W.M., Ducklow H.W. (2011) Jellyfish blooms result in a major microbial respiratory sink of carbon in marine systems. PNAS, 108: 10225-10230.
Cucchi-Mouillot P., Sucré E., Santos R., Leclère J., Charmantier G. Castille R.,(2011) . Embryonic development of the sea bas (Dicentrachus labrax). Helgoland Mar. Res., DOI 10.1007/s10152-011-0262-3
de Lorgeril J, Zenagui R, Rosa R, Piquemal D, and Bachère E. (2011).Whole transcriptome profiling of successful immune response to Vibrio infections in the oyster Crassostrea gigas by digital gene expression analysis. PlosOne 6(8):p. e23142.
del Giorgio P.A., Gasol J.M., Condon R., Longnecker K., Bouvier T., Bouvier C., Sherr E. (2011) Coherent patterns inbacterial growth, growth efficiency, and leucine metabolism along a northeast Pacific inshore-offshore transect. Limnology & Oceanography 56: 1-16.
Duperthuy M, Schmitt P, Garzón E, Caro A, Rosa R, Le Roux F, Lautrédou-Audouy N, Got P, Romestand B, de Lorgeril J, Kieffer-Jaquinod S, Bachère E, and Destoumieux-Garzón D (2011) Use of OmpU porins for attachment and invasion of Crassostrea gigas immune cells by the oyster pathogen Vibrio splendidus. Proc Natl Acad Sci USA 108(7):2993-8.
Durrieu de Madron et 93 autres auteurs dont Mostajir B (2011). Marine ecosystems’ responses to climatic and anthropogenic forcings in the Mediterranean. Progress in Oceanography 91(2): 97-166
Filleron A, Chiron R, Reverdy ME, Jean-Pierre H, Dumitrescu O, Aleyrangues L, Counil F, Jumas-Bilak E, Marchandin H. (2011). Staphylococcus aureus with decreased susceptibility to glycopeptides in cystic fibrosis patients. J. Cystic Fibrosis, 10: 377-382.
Filleron A., Chiron R., Reverdy ME, Jean-Pierre H, Dumitrescu O, Aleyrangues L, Counil F, Jumas-Bilak E, Marchandin H. (2011). Utility of the Etest GRD for detecting Staphylococcus aureus with reduced susceptibility to glycopeptides in Cystic Fibrosis patients. Eur J Clin Microbiol Infect Dis. In press.
Fouilland E & Mostajir B (2011) Complementary support for the new ecological concept of “bacterial independence on contemporary phytoplankton production in oceanic waters. FEMS Microbiology Ecology 78: 206-209.
Gallon O, Pina P, Gravet A, Laurent F, Lamy B, Delarbre JM, Doucet-Populaire F, Decousser JW; College de Bacteriologie Virologie Hygiene Study Group (2011). Performance of a New MicroScan WalkAway PC30 panel and disk diffusion method for detection of oxacillin resistance in Staphylococcus spp. J Clin Microbiol. 49(6):2269-71.
Genovesi B, Shin-Grzebyk M-S, Grzebyk D, Laabir M, Gagnaire P-A, Vaquer A, Pastoureaud A, Lasserre B, Collos Y, Berrebi P and Masseret E (2011) - Assessment of cryptic species diversity within blooms and cyst bank of the Alexandrium tamarense complex (Dinophyceae) in a Mediterranean lagoon facilitated by semi-multiplex PCR. Journal of Plankton Research 33: 405-414.
Giffard-Mena I., Boulo V., Abed C., Cramb G., Charmantier G. (2011) – Expression and localization of Aquaporin in the sea-bass (Dicentrarchus labrax) during ontogeny. Frontiers in Physiology, Vol 2, 34, 13p.
Gravel D, Massol F, Canard E, Mouillot D, Mouquet N (2011). Trophic theory of island biogeography. Ecology Letters 14: 110-116
Gravel D., Bell T., Barbera C., Bouvier T., Pommier T., Venail P., Mouquet N. (2011) Experimental niche evolution alters the strength of the diversity-productivity relationship. Nature 469: 89-92.
Hédouin L., Pringault O., Bustamante P., Fichez R., Warnau M. (2011). Validation of two tropical marine bivalves as bioindicators of mining contamination in the New Caledonia lagoon: Field transplantation experiments. Water Res 45: 483-496
Hu M. Y., Tseng Y.-C., Lin L.-Y., Chen P.-Y., Charmantier-Daures M., Hwang P.-P. & Melzner F. (2011). New insights into ion regulation of cephalopod molluscs: a role of epidermal ionocytes in acid-base regulation during embryogenesis, Am. J. Physiol.-Regulatory, Comparative and Integrative Physiology, in press
Jacquot A, Neveu D, Aujoulat F, Mercier G, Marchandin H, Jumas-Bilak E, Picaud JC. (2011). Dynamics and clinical evolution of bacterial gut microflora in extremely premature patients. Journal of Pediatrics. 158:390-396.
Jauzein, C., Collos Y., Laabir, M., Vaquer, A. (2011). Dark metabolism and carbon-nitrogen uncoupling in the toxic dinoflagellate Alexandrium catenella (Dinophyceae). Harmful Algae 11 : 73-80.
Kâ S., Bouvy M., Sane S., Ba N., Arfi R., Thiaw O.T., Pagano M. (2011) Zooplankton communities in shallow lake Guiers (Senegal, West Africa). International Review of Hydrobiology 96: 405-424.
Killen SS, Marras S, McKenzie DJ (2011). Fuel, fasting, fear: Routine metabolic rate and food deprivation exert synergistic effects on risk-taking in individual juvenile European sea bass. Journal of Animal Ecology 80: 1024–1030
Krasnov BR, Mouillot D, Shenbrot GI, Khokhlova IS, Poulin R (2011)- Beta-specificity: the turnover of host species in space and a way to measure host specificity - International Journal for Parasitology. 41: 33–41
Krasnov BR, Poulin R, Mouillot D (2011)-Scale-dependence of phylogenetic signal in ecological traits of ectoparasites-Ecography.34:114-122
Laabir, M., Jauzein, C., Genovesi, B., Masseret, E., Grzebyk, D., Cecchi, P., Vaquer, A., Perrin, Y., Collos, Y. (2011). Influence of temperature, salinity and irradiance on the growth and cell yield of the harmful red tide dinoflagellate Alexandrium catenella colonising Mediterranean waters. Journal Plankton Research 33 : 1550-1563.
Lamy B, Kodjo A, Laurent F; the ColBVH Study Group (2011). Identification of Aeromonas isolates by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Diagn Microbiol Infect Dis. Jul 13.
Lamy B, Laurent F, Gallon O, Doucet-Populaire F, Etienne J, Decousser JW; The Collège de Bactériologie Virologie Hygiène (ColBVH) (2011) Study Group. Antibacterial resistance, genes encoding toxins and genetic background among Staphylococcus aureus isolated from community-acquired skin and soft tissue infections in France: a national prospective survey. Eur J Clin Microbiol Infect Dis. 2011 Oct 14.
Lauzeral C, Leprieur F, Beauchard O, Duron Q, Oberdorff T, Brosse S (2011) Identifying climatic niche shifts using coarse-grained occurence data: a test with non-native freshwater fish -Global Ecology and Biogeography 20, 407-414
Leboulanger C, Schwartz P, Somville P, Diallo AO, Pagano M (2011) Sensitivity of Two Mesocyclops (Crustacea, Copepoda, Cyclopidae) from Tropical and Temperate Origins, to the Herbicides Diuron and Paraquat, and the Insecticides Temephos and Fenitrothion. Bull Environ Contam Toxicol 87: 487-493.
Leboulanger C., Bouvy M., Carré C., Cecchi P., Amalric L., Bouchez M., Pagano M., Sarazin G. (2011) A comparison of the effects of two herbicides and an insecticide on tropical freshwater plankton in microcosms. Archives of Environmental Contamination and Toxicology 61:599-613.
Leclere J, Oberdorff T, Belliard J, Leprieur F (2011) A comparison of modeling techniques to predict juvenile 0+ fish species occurences in a large river system. Ecological Informatics 6: 276-285.
Lee, C.E., Posavi M., Charmantier G., (2011) Rapid evolution of body fluid regulation following independent invasions into freshwater habitats. Journal of Evolutionary Biology (In Press)
Leprieur F, Tedesco P, Hugueny B, Beauchard O, Dür H, Brosse S, Oberdorff T (2011). Partitioning global patterns of freshwater fish beta diversity reveals contrasting signatures of past climate changes. Ecology Letters 14, 325–334
Leyssene D, Gardes S, Vilquin P, Flandrois JP, Carret G, Lamy B (2011). Species-driven interpretation guidelines in case of a single-sampling strategy for blood culture. Eur J Clin Microbiol Infect Dis. Apr 18. [Epub ahead of print]
Li H, Parisi MG, Parrinello N, Cammarata M, Roch P (2011). Molluscan antimicrobioal peptides, a review from activity-based evidences to computer-assisted sequences. Invertebr Surv J. - 8:85-97
Mailles A, Lecuit M, Goulet V, Leclercq A, Stahl JP (2011) National Study on Listeriosis Encephalitis Steering Committee. Listeria monocytogenes encephalitis in France. Med Mal Infect. 41(11):594-601.
Mailo-Bellon P.-A., Marques A., Pilar Garcia-Royo M. (2011). Myxosporean Infection of Grey Mullet in the Ebro Delta: Identification and Ultrastructure of Myxobolus ichkeulensis Bahri and Marques, 1996 Infecting the Gills of Mugil cephalus L. Acta Protozoologica, 50 : 65-69.
Marie B, Joubert C, Belliard C, Tayale A, Zanella-Cléon I, Marin F, Gueguen Y, and Montagnani C. (2011). Characterization of MRNP34, a novel methionine-rich nacre protein from the pearl oysters. Amino acids, doi: 10.1007/s00726-011-0932-
Marras S, Killen SS, Domenici P, Claireaux G, McKenzie DJ (2011). Is the teleost fast-start escape response a stable individual trait? An evaluation in juvenile European sea bass - Journal of Experimental Biology 214: 3102-3110
Maurice C.F., Mouillot D., Bettarel Y., de Wit R., Sarmento H., Bouvier T. (2011) Disentangling the relative influence of bacterioplankton, phylogeny and metabolism on lysogeny in reservoirs and lagoons. ISME J 5: 831-842.
Mazelet L, Dietrich J, Rolland J.L (2011). New RT-qPCR assay for viral nervous necrosis virus detection in sea bass, Dicentrarchus labrax (L.): Application and limits for hatcheries sanitary control. Fish Shellfish Immunol. 30 (1):27-32.
McKindsey CW, Archambault P, Callier M, Olivier F (2011). Influence of suspended and off-bottom mussel culture on the sea bottom and benthic habitats: a review. Canadian Journal of Zoology 89: 622-646
Mercier L, Darnaude A, Bruguier O, Vasconcelos RP, Cabral HN, Costa MJ, Lara M, Jones DL, Mouillot D (2011)-Statistical models and chemical elements combinations for optimal accuracy in fish origin classification by otolith microchemistry-Ecological Applications 21(4):1352-1364
Mercier L, Panfili J, Paillon C, N'Diaye A, Mouillot D, Darnaude AM (2011)- Otolith reading and multi-model inference for improved estimation of age and growth in wild gilthead seabream (Sparus aurata L.) - Estuarine, Coastal and Shelf Science 92: 534-545
Meynard CN, Devictor V, Mouillot D, Thuiller W, Jiguet F, Mouquet N (2011). Beyond taxonomic diversity patterns: how do ?, ? and ? components of functional and phylogenetic diversity respond to environmental gradients across France? -Global Ecology & Biogeography 20: 893-903.
Migon C., Motegi C., Mari X., Dufour A ., Weinbauer M.G. (2011) A Preliminary Study on Metal and Nutrient Concentrations in Running Water Systems in Southern New Caledonia. Bulletin of Environmental Contamination and Toxicology. doi:10.1007/s00128-011-0367-z
Montagnani C, Marie B, Marin F, Belliard C, Riquet F, Tayalé A, Zanella-Cléon I, Fleury E, Gueguen Y, Piquemal D, and Cochennec-Laureau N. (2011). Pmarg-Pearlin is a matrix protein involved in nacre framework formation in the pearl oyster Pinctada margaritifera. ChemBioChem doi: 10.1002/cbic.201100216
Mouchet M and Mouillot D (2011). Decomposing the phylogenetic entropy into alpha, beta and gamma components. Biology Letters 7: 205–209
Mouillot D, Albouy C, Guilhaumon F, Ben Rais Lasram F, Coll M, Devictor V, Meynard CN, Pauly D, Tomasini J-A, Troussellier M, Velez L, Watson R, Douzery EJP, Mouquet N (2011)- Protected and threatened components of fish biodiversity in the Mediterranean Sea - Current Biology 21 (12) 1044-1050
Mouillot D, Villéger S, Scherer-Lorenzen M, Mason NWH (2011) Functional structure of biological communities predicts ecosystem multifunctionality. Plos One. 6(3): e17476
Nguikwie SK, Nyegue MA, Ndoye FCB, Ngono Ngane A, Romestand B, Casabianca H, Amvam Zollo PH and Menut C.(2011). Essential oils of the Aframomum species collected in Cameroon as potential source of (E)- Nerolidol : Chemical and antibacterial activities. Food Chemistry (in press).
Oukacine F, Garrelly L, Romestand B, Goodall DM, Zou T, Cottet H. (2011) Focusing and Mobilization of Bacteria in Capillary Electrophoresis. Anal Chem 83(5) :1571-1578.
Oukacine F, Joselito PQ, Garrelly L, Romestand B, Zou T, and Cottet H. (2011).Simultaneous Electrokinetic and Hydrodynamic Injection for high sensitivity bacteria analysis in Capillary Electrophoresis. Anal Chem 83: 499-4954
Parer S, Lotthé A, Chardon P, Poncet R, Jean-Pierre H, Jumas-Bilak E. (2011). An outbreak of heterogeneous Glycopeptide-Intermediate Staphylococcus aureus related to a device source in Intensive Care Unit. Infection Control Hosp. Epid. In press.
Pecqueur D, Vidussi F, Fouilland E, Le Floc’h E, Mas S, Roques C, Salles C, Tournoud M-G, Mostajir B (2011) Dynamics of microbial planktonic food web components during a river flash flood in a Mediterranean coastal lagoon, Hydrobiologia 673 : 13-27.
Perazzolo LM, Bachère E, Rosa RD, Goncalves P, Andreatta ER, Daffre S, and Barracco MA. (2011) Alpha2-macroglobulin from an Atlantic shrimp: Biochemical characterization, sub-cellular localization and gene expression upon fungal challenge. Fish Shellfish Immunol. e2011/09/0
Poulin R, Guilhaumon F, Randhawa HS, Luque JL, Mouillot D (2011)- Identifying hotspots of parasite diversity from species-area relationships: host phylogeny versus host ecology - Oikos. 120:740–747
Poulin R, Krasnov BR, Mouillot D (2011)- Host specificity in phylogenetic and geographic space - Trends in Parasitology 8 : 351-361.
Poulin R, Krasnov BR, Mouillot D, Thieltges DW (2011). The comparative ecology and biogeography of parasites. Philosophical Transactions of the Royal Society of London B 366: 2379–2390
Rajkumar M., Manokaran S., J. Sun and Trilles J.-P. (2011).- A review of Epipenaeon ingens Nobili, 1906 (Isopoda: Bopyridae) host species and documentation of a new host, Metapenaeopsis stridulans (Alcock, 1905) (Decapoda: Penaeidae). Chinese J. Oceanol. Limnol., 29, 136-140.
Ramdane Z. and J-P. Trilles (2011). - Argulus vittatus (Rafinesque-Smaltz, 1814) (Crustacea: Branchiura) parasitic on Algerian fishes. Parasitology Research. Published Online : 11 October 2011 (In press) DOI 10.1007/s00436-011-2654-3
Rameshkumar G., Ravichandran S. & Trilles J.-P. (2011).- Cymothoidae (Crustacea, Isopoda) from Indian fishes. Acta Parasitologica, 56,78-91.
Reichardt F., Chaumande B., Habold C., Robin J.P., Ehret-Sabatier L., Le Maho Y., Liewig N., Angel F., Lignot J.H. (2011). Kaolinite ingestion facilitates restoration of body energy reserves during refeeding after prolonged fasting. Fundam. Clin. Pharmacol. Epub ahead of print.
Rochelle-Newall E., Thuoc V Chu, Pringault O., Amouroux D., Arfi R., Bettarel Y., Bouvier T., Bouvier C., Got P., Huyen T Nguyen; Mari X., Navarro P., Nghi T Duong, Trang T Cao, Thu T Pham, Ouillon S.,Torréton J-P. (2011) Phytoplankton distribution and productivity in a highly turbid, tropical coastal system (Bach Dang Estuary, Vietnam). Marine Pollution Bulletin. 62: 2317-2329.
Rocklin D, Tomasini JA, Culioli JM, Pelletier D, Mouillot D (2011) Regulation of recreational activities in a multiple-use marine protected area benefits artisanal fisheries PLos One 6 : e23820
Rosa, RD, Santini A, Fievet J, Bulet P, Destoumieux-Garzon D, and Bachère E (2011) Big Defensins a diverse family of antimicrobial peptides that follows different patterns of expression in hemocytes of the oyster Crassostrea gigas. PLoS One, 2011. 6(9): p. e25594
Rosani U, Varotto L, Rossi A, Roch Ph, Novoa B, Figueras A, Pallavicini A & Venier P (2011) Massively parallel amplicon sequencing reveals isotype-specific variability of antimicrobial peptide transcripts in Mytilus galloprovincialis. PlosOne, vol 6, issue 11 (11 pages).
Rossi F., Incera M., Callier M., Olabarria C. (2011) The effect of detrital invasive and native macroalgal mixing on the nitrogen and carbon cycling of intertidal sediments. Marine Biology 158: 2705-2715
Rossi F., Middelburg J.J. (2011) Intraspecific diet shift in Macoma balthica during community reassembly after severe disturbance. Estuarine Coastal Shelf Science 92: 496-501
Sankar R., Ananthan G., Rajkumar M., Gopalakrishnan A., Vasanthan T.M., & Trilles J.-P., (2011). First record of three giant marine Bathynomids (Crustacea, Isopoda, Cirolanidae) from India. Acta Oceanologica Sinica 29 : 1-5.
Shen K.-N, Jamandre B W. Hsu C-C, Tzeng W-N, Durand J-D (2011)- Plio-Pleistocene sea level and temperature fluctuations in the northwestern Pacific promoted speciation in the globally-distributed flathead mullet Mugil cephalus. BMC Evolutionary Biology 11:83
Sime-Ngando T., Lucas S., Colombet J., Robin A., Bettarel Y., Desmond E., Gribaldo S., Pause Tucker K., Forterre P., Breitbart M., Pranghishvili D. (2011) Diversity of virus-host systems in hypersaline Lake Retba, Senegal. Environmental Microbiology, 13:1956-1972.
Sonthi M, Toubiana M, Pallavicini A, Venier P, Roch P. (2011). Diversity of Coding Sequences and Gene Structures of the Antifungal Peptide Mytimycin (MytM) from the Mediterranean Mussel, Mytilus galloprovincialis. . Mar Biotechnol 13:857-867.
Spencer M., Birchenough S. N. R., Mieszkowska N., Robinson L. A., Simpson S. D., Burrows M. T., Capasso E., Cleall-Harding P., Crummy J., Duck C., Eloire D., Frost M., Hall A. J., Hawkins S. J., Johns D. G., Sims D. W., Smyth T. J., Frid C. L. J. (2011). Temporal change in UK marine communities: trends or regime shifts? Marine Ecology – An Evolutonary Perspective, 32 : 10-24.
Sucré, E., Charmantier-Daures, M., Grousset, E. & Cucchi-Mouillot, P. (2011). - Ionocytes embryonnaires chez le loup ou bar (Dicentrarchus labrax) structure et fonctionnalité. Develop. Growth Differ. 53:26-36.
Taghizadeh R. A. Z.,., Khodabandeh S., Abtahi B., Charmantier G., & Charmantier-Daures M. (2011 ) Ultrastructure and osmoregulatory function of the kidney in larvae of the Persian Sturgeon, Acipenser persicus. J. Fish Biol. 78: 1359-1374.
Thiaw M, Gascuel M, Thiao D, Thiaw OT, Jouffre D (2011). Analyzing environmental and fishing effects on a short-lived species stock: the dynamics of octopus population, Octopus vulgaris, in the Senegalese waters. African Journal of Marine Science 33: 209–222
Thomas Y, Belliard C, Garen P, Gueguen Y, and Montagnani C. (2011). Development of in situ hybridization using 16S rRNA gene to monitor black-lip pearl oyster, Pinctada margaritifera, larvae in plankton samples. Aquat Living Resour. 24: 27-34.
Tine M, McKenzie DJ, Bonhomme F, Durand J-D (2011)- Salinity-related variation in gene expression in wild populations of the black-chinned tilapia from various West African coastal marine, estuarine and freshwater habitats. Estuarine, Coastal and Shelf Science, 91: 102-109
Torrente-Villara G, Zuanon JAS, Leprieur F, Oberdorff T, Tedesco P (2011) -Effects of natural rapids and waterfalls on fish assemblage structure in the Madeira River (Amazon Basin). Ecology of Freshwater Fish 20: 588-597.
Trape S, Durand J-D (2011)- First record of Mugil capurrii (Mugilidae, Perciformes) in the Gulf of Guinea. Journal of Fish Biology. 78: 937-940
Trilles J.-P., Randall J. E. (2011). Redescription of Elthusa emarginata (Bleeker, 1857) (Crustacea, Isopoda, Cymothoidae), type species of the genus Elthusa Schioedte & Meinert, 1884. Marine Biology Research, 7 : 453-465.
Trottet A., Fouilland E., Leboulanger C., Lanouguère E., Bouvy M. (2011) Use of inhibitors for coastal bacteria and phytoplankton: Application to nitrogen uptake measurement. Estuarine Coastal and Shelf Science 93: 151-159.
Van Der Wal D., Forster R.M., Rossi F., Hummel H., Ysebaert T., Roose F., Herman P.M.J. (2011). Ecological evaluation of an experimental beneficial use scheme for dredged sediment disposal in shallow tidal waters. Marine Pollution Bulletin, 62: 99-108
Venail P. A., Kaltz O., Olivieri I., Pommier T., Mouquet N. (2011). Diversification in temporally heterogeneous environments: effect of the grain in experimental bacterial populations. Journal of Evolutionary Biology, 24 : 2485-2495.
Venier P, Varotto L, Rosani U, Millino C, Celegato B, Bernante F, Lanfranchi G, Novoa B, Roch P, Figueras A, Pallavicini A. (2011). Insights into the innate immunity of the Mediterranean mussel Mytilus galloprovincialis. BMC Genomics 26: 12:69.
Vidal-Dupiol J, Ladrière O, Destoumieux-Garzόn D, Sautière PE, Meistertzheim AL, Tambutté E, Tambutté S, Duval D, Fouré L, Adjeroud M, and Mitta G. (2011). Innate immune responses of a scleractinian coral to vibriosis. J Biol Chem. 286(25):22688-98
Vidussi F., Mostajir B., Fouilland E., Le Floc’h E., Nouguier J., Roques C., Got P., Thibault-Botha D., Bouvier T., Troussellier M. (2011). Effects of experimental warming and increased ultraviolet B radiation on the Mediterranean plankton food web. Limnology and Oceanography 56 (1): 206–218.
Villéger S, Novack-Gottshall P, Mouillot D (2011). The multidimensionality of the niche reveals functional diversity changes in benthic marine biotas across geological time. - Ecology Letters. 14: 561–568.
Voituron Y., de Fraipont M., Issartel J., Guillaume O., Clobert J. (2011). Extreme lifespan of the human fish (Proteus anguinus): a challenge for ageing mechanisms. Biology Letters, 7 : 105-107.
Yebra L., Bonnet D., Harris R.P., Lindeque P.K., Peijnenburg K.T.C.A. (2011) Population structuring of Calanus helgolandicus and C. euxinus in European waters: morphology, genetics and hydrography. Marine Ecology Progress Series 428: 135-149.
2010
Albouy C, Mouillot D, Rocklin D, Culioli JM, Le Loc'h F (2010).. Simulation of the combined effects of artisanal and recreational fisheries on a Mediterranean MPA ecosystem using a trophic model. Marine Ecology Progress Series 412:207-221
Andree K, Axtner J, Bagley, M. J., Barlow, E. J., Beebee, T. J. C., Bennetzen, J. L., Bermingham, E., Boisselier-Dubayle, M. C., Bozarth, C. A., Brooks, C. P., Brown R. P., Catanese G., Cavers S., Ceron-Souza I., Chak S. T. C., Chan, M. N., Charles-Dominique, P., Chen, C. Y., Chen, J. D., Chinchilla, L., Da Silva, D., Dafreville, S., Daunt, F., Delatte, H., Dorge, T., Duncan, N., Durand, J.-D. et al. (2010).. Permanent genetic resources added to Molecular Ecology Resources Database. Molecular Ecology Resources, 10, 1098-1105.
Benfodda Z, Guillen F, Romestand B, Dahmani A, Blancou H. (2010). Synthesis and investigation of inhibition effect of fluorinated sulfonamide derivatives on carbonic anhydrase. European Journal of Medicinal Chemistry 47 1225-1229.
Blanchard, J. L., Coll, M., Trenkel, V. M. Vergnon, R., Yemane, D., Jouffre D., Link, J. S., and Shin, Y-J. (2010). Trend analysis of indicators: a comparison of recent changes in the status of marine ecosystems around the world. ICES Journal of Marine Science 67: 732-744.
Blanchet, S., Grenouillet, G., Beauchard, O., Tedesco, P.A., Leprieur, F., Dürr, H., Busson, F., Oberdorff, T & Brosse S. (2010). Non-native species disrupt the worldwide patterns of freshwater fish body size: implications for Bergmann's rule. Ecology Letters 13: 421-431.
Blel H., Panfili J., Guinand B., Berrebi P., Said K., Durand J.-D. (2010). Selection footprint at the first intron of the Prl gene in natural populations of the flathead mullet (Mugil cephalus, L. 1758). Journal of Experimental Marine Biology and Ecology (sous presse).
Bodinier C., Sucré E., Lecurieux-Belfond L., Charmantier G. (2010). Ontogeny of osmoregulation and salinity tolerance in the gilthead sea bream Sparus aurata. Comparative Biochemistry and Physiology A, 157: 220-228.
Bonnet D., Lindeque P., Harris R.P. (2010). Sagitta setosa predation on Calanus helgolandicus in the English Channel. Journal of Plankton Research 32: 725-737
Bourgeois S, Hochard S, Pringault O. (2010). Functioning of subtidal microphytobenthos in a tropical coastal environment: Effects of inorganic and organic compound supplies on production, respiration and migration. Aquatic Microbial Ecology 61: 13-29
Bouvy M, Arfi R., Bernard C., Carré C., Got P., Pagano M., Troussellier M. (2010). Estuarine microbial community characteristics as indicators of human-induced changes (Senegal River, West Africa). Estuarine and Coastal Shelf Science 87: 573-582.
Canesi L, Barmo C, Fabbri R, Ciacci C, Vergani L, Roch Ph & Gallo G. (2010). Effects of Vibrio challenge on digestive gland biomarkers and antioxidant gene expression in Mytilus galloprovincialis. Comp Biochem Physiol, Part C, 152:399-406
Catherine A., Mouillot D., Escoffier N., Bernard C., Troussellier M. (2010). Can we predict the eutrophication status of lakes and reservoirs using low cost environmental variables? Freshwater Biology 55: 2425-2435.
Ciacci C, Citterio B, Betti M, Canonico B, Roch Ph., Canesi L (2010). Specificity of anti-Vibrio immune response through p38 MAPK and PKC activation in the hemocytes of the mussel Mytilus galloprovincialis. Journal Invertebrate Pathology 105:49
Cochennec-Laureau, N., C. Montagnani, D. Saulnier, A. Fougerouse, P. Levy, C. Lo (2010). "A histological examination of grafting success in pearl oyster Pinctada margaritifera in French Polynesia." Aquatic Living Resources 23: 131-140.
Coll M., Piroddi C., Steenbeek J., Kaschner K., Ben Rais Lasram F., Aguzzi J., Ballesteros E., Bianchi C.N., Corbera J., Dailianis T., Danovaro R., Estrada M., Froglia C., Galil B.S., Gasol J.M., Gertwagen R., Gil J., Guilhaumon F., Kesner-Reyes K., Kitsos M.S., Koukouras A., Lampadariou N., Laxamana E., López-Fé de la Cuadra C.M., Lotze H.K., Martin D., Mouillot D., Oro D., Raicevich S., Rius-Barile J., Saiz-Salinas J.I., San Vicente C., Somot S., Templado J., Turon X., Vafidis D., Villanueva R. & Voultsiadou E. (2010). The Biodiversity of the Mediterranean Sea: Estimates, Patterns, and Threats. Plos One 5: 11842.
Coll, M., Shannon, L. J., Yemane, D., Link, J. S., Ojaveer, H., Neira, S., Jouffre D., Labrosse, P., Heymans, J. J., Fulton, E. A., Shin, Y-J. (2010). Ranking the ecological relative status of exploited marine ecosystems. ICES Journal of Marine Science 67: 769-786.
David, R., C. Treguier, C. Montagnani, C. Belliard, P. Levy, G. Nedelec, V. Joufoques, G. Remoissenet, Y. Gueguen and N. Cochennec-Laureau (2010). "Molecular detection of betanodavirus from the farmed fish, Platax orbicularis (Forsskal) (Ephippidae), in French Polynesia." Journal of Fish Diseases 33: 451-454.
Denis M., Thyssen M., Martin V., Manca B., Vidussi F. (2010). Ultraphytoplankton basin-scale distribution in the eastern Mediterranean Sea in winter: link to hydrodynamism and nutrients. Biogeosciences 7: 2227-2244.
Devictor V., Clavel J., Juillard R., Lavergne S., Mouillot D., Thuiller W., Venail P., Villeger S., Mouquet N. (2010). Towards a general framework for defining and measuring ecological specialization. Journal of Applied Ecology 47: 15-25.
Devictor V., Mouillot D., Meynard C.N., Jiguet F., Thuiller W. & Mouquet N. (2010). Spatial mismatch between taxonomic, phylogenetic and functional diversity reveals the extent of conservation needs in a changing world. Ecology Letters 13: 1030-1040.
Diaz-Jaimes P., Uribe-Alcocer M., Rocha-Olivares A., J García de León F., Nortmoon P., Durand J.D. (2010). Global phylogeography of the dolphinfish (Coryphaena hippurus): the influence of the large effective population size and recent dispersal on the divergence of a marine pelagic cosmopolitan species. Molecular Phylogenetics and Evolution, 57: 1209-1218.
Duperthuy M, Binesse J, Le Roux F, Caro A, Got P, Romestand B, Givaudan A, Mazel D, Bachère E, and Destoumieux-Garzón D. (2010). The major outer-membrane protein OmpU of Vibrio splendidus contributes to host antimicrobial peptide resistance and is required for virulence in the oyster Crassostrea gigas. Environmental Microbiology 12: 951-963.
Dupont-Prinet A., Chatain B., Grima L., Vandeputte M., Claireaux G., McKenzie D.J. (2010). Physiological mechanisms underlying a trade-off between growth rate and tolerance of starvation in the European sea bass (Dicentrarchus labrax). Journal of Experimental Biology 213: 1143 - 1152
Durand J.D., Diatta A. M., Diop K., Trape S. (2010). Multiplex 16S rRNA haplotype-specific PCR, a rapid and convenient method for fish species identification: an application to West African Clupeiform larvae. Molecular Ecology Resources 10: 568-572
Eloire D., Somerfield P.J., Conway D.V.P., Halsband-Lenk C., Harris R., Bonnet D. (2010). Temporal variability and community composition of zooplankton at Station L4 in the Western Channel: twenty years of sampling. Journal of Plankton Research 32: 657-679
Faure V., Pinazo C., Torreton J.P. & Jacquet S. (2010). Modelling the spatial and tempral variability of the SW lagoon of New Caledonia I:A new biogeochemical model based on microbial loop recycling. Marine Pollution Bulletin 61:465-479
Faure V., Pinazo C., Torreton J.P. & Douillet P. (2010). Modelling the spatial and tempral variability of the SW lagoon of New Caledonia II: A new biogeochemical model based on microbial loop recycling. Marine Pollution Bulletin 61:480-502.
Fleury, E., Moal, J., Boulo, V., Daniel, J. Y., Mazurais, D., Henaut, A., Corporeau, C., Boudry, P., Favrel, P., Huvet, A. (2010). Microarray-Based Identification of Gonad Transcripts Differentially Expressed Between Lines of Pacific Oyster Selected to Be Resistant or Susceptible to Summer Mortality. Marine Biotechnology 12:326-339
Fortuna M.A., Stouffer D.B., Olesen J.M., Jordano P., Mouillot D., Krasnov B.R., Poulin R., Bascompte J. (2010). Nestedness versus modularity in ecological networks: two sides of the same coin? Journal of Animal Ecology 79: 811-817.
Fouilland E., Mostajir B. (2010). Revisited phytoplanktonic carbon dependency of heterotrophic bacteria in freshwaters, transitional, coastal and oceanic waters. FEMS Microbiology Ecology 73: 419-429
Geffard O. Xuereb B., Chaumot A., Geffard A., Biagianti S., Noël C., Abbaci K., Garric J., Charmantier G., Charmantier-Daures M. (2010).Ovarian cycle and embryonic development in Gammarus fossarum: Application for reproductive toxicity assessment. Environmental Toxicology & Chemistry 29, 2249-2259
Gning, N., Le Loc'h, F., Thiaw, O.T., Aliaume, C., Vidy, G. (2010). Estuarine resources use by juvenile Flagfin mojarra (Eucinostomus melanopterus) in an inverse tropical estuary (Sine Saloum, Senegal). Estuarine, Coastal and Shelf Science 86: 683-691.
Grenz C, Le Borgne R, Fichez R, Torréton J-P (2010). Tropical lagoon multidisciplinary investigations: An overview of the PNEC New Caledonia pilot site. Marine Pollution Bulletin 61(7-12): 267-268
Grenz C., Denis L., Pringault O., Fichez R. (2010). Spatial and temporal variability in benthic oxygen and nutrient fluxes in a tropical lagoon (New Caledonia). Marine Pollution Bulletin 61: 399-412.
Guilhaumon F., Mouillot D. & Gimenez O. (2010). mmSAR: an R-package for multimodel species-area relationship inference. Ecography 33: 420-424.
Hédouin L, Pringault O, Bustamante P, Fichez R and Warnau M. (2010). Validation of two tropical marine bivalves as bioindicators of mining contamination in the New Caledonia lagoon: Field transplantation experiments. Water Research (In press)
Highfield J.M., Eloire D., Conway D.V.P., Lindeque P.K., Attrill M.J., Somerfield P.J. (2010). Seasonal dynamics of meroplankton assemblages at Station L4. Journal of Plankton Research 32 (5): 681-691.
Hirst A.G., Bonnet D., Conway DVP & Kiorboe T. (2010). Does predation control adult sex ratios and longevities in marine pelagic copepods? Limnology and Oceanography 55(5): 2193-2206.
Hochard, S, Pinazo C, Grenz C, Evans J, Pringault O. (2010). Impact of microphytobenthos on the sediment biogeochemical cycles: a modelling approach. Ecological Modeling 221:1687-1701
Hu M., Sucré E., Charmantier-Daures M., Charmantier G., Lucassen M., Himmerkus N., Melzner F. (2010). Localization of ion-regulatory epithelia in embryos and hatchlings of two cephalopods . Cell Tissue Research 339: 571-583
Issartel J., Boulo V., Wallon S., Olivier Geffard O., Charmantier G., (2010). Cellular and molecular osmoregulatory responses to cadmium exposure in Gammarus fossarum (Crustacea, Amphipoda). Chemosphere 81: 701-710
Iversen N.K., Dupont-Prinet A., Fingsdorf I., McKenzie D.J. and Wang T. (2010). Autonomic control of the heart during specific dynamic action and aerobic exercise in the European sea bass Dicentrarchus labrax. Comparative Biochemistry and Physiology 156A: 463-468.
Iversen N.K., McKenzie D.J., Malte H. and Wang T. (2010). Reflex bradycardia does not contribute to regulation of aerobic metabolism by the European eel Anguilla anguilla in progressive hypoxia. Journal of Comparative Physiology 180B: 495 - 502.
Jackson, D. J., C. McDougall, B. Woodcroft, P. Moase, R. A. Rose, M. Kube, R. Reinhardt, D. S. Rokhsar, C. Montagnani, C. Joubert, D. Piquemal, D.M. Degnan (2010). "Parallel evolution of nacre building gene sets in molluscs." Molecular Biology and Evolution 27: 591-608.
Jauzein, C., Labry, C., Youenou, A., Quéré, J., Delmas, D., Collos, Y. (2010). Growth and phosphorus uptake by the toxic dinoflagellate Alexandrium catenella (Dinophyceae) in response to phosphate limitation. Journal of Phycology 46 : 926-936.
Joubert C., D. Piquemal, B. Marie, L. Manchon, F. Pierrat, I. Zanella-Cléon, N. Cochennec-Laureau, Y. Gueguen, C. Montagnani. (2010). Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization. BMC Genomics 11:613.
Jouffre D., Borges, M. F., Bundy, A., Coll, M., Diallo, I., Fulton, E. A., Guitton, J, Labrosse, P., Mohamed Abdellahi, K. o., Masumbuko, B., and Thiao D. (2010). Estimating EAF indicators from scientific trawl surveys: theoretical and practical concerns. ICES Journal of Marine Science 67: 796-806.
Jourdan-Pinet H., Dupont-Prinet A., Claireaux G., McKenzie D.J. (2010). An investigation of metabolic prioritisation in the European sea bass, Dicentrarchus labrax. Physiological and Biochemical Zoology 83: 68 - 77.
Justine JL, Beveridge I, Boxhall G, Bray R, Moravec F., Trilles J.-P. (2010). An annotated list of parasites (Isopoda, Copepoda, Mo,ogenea, Digenea, Cestoda and Nematoda) collected in groupers (Serranidae, Epinephelinae) in New Caledonia emphasizes parasite biodiversity in coral reef fish. Folia Parasitologica 57: 237-262.
Kopp D., Bouchon-Navaro Y., Louis M., Mouillot D., Bouchon C. (2010). Juvenile fish assemblages in Caribbean seagrass beds: does nearby habitat matter? Journal of Coastal Research 26: 1133-1141.
Kopp D., Bouchon-Navaro Y., Louis M., Mouillot D., Bouchon C. (2010). Herbivorous fishes and the potential of Caribbean marine reserves to preserve coral reef ecosystems. Aquatic Conservation 20: 516-524.
Krasnov B.R., Mouillot D., Shenbrot G.I., Khokhlova I.S., Poulin R. (2010). Deconstructing spatial patterns in species composition of ectoparasite communities: the relative contribution of host composition, environmental variables and geography. Global Ecology & Biogeography 19: 515-526.
Krasnov B.R., Mouillot D., Shenbrot G.I., Khokhlova I.S., Vinarski M.V., Korallo-Vinarskaya N.P., Poulin R. (2010). Similarity in ectoparasite faunas of mammals as a function of host phylogenetic, geographic, or environmental distances: which matters the most? International Journal for Parasitology 40: 807-817
Lasram F.B.R., Guilhaumon F., Albouy C., Somot S., Thuiller W., Mouillot D. (2010). The Mediterranean Sea as a "cul-de-sac" for endemic fishes facing climate change. Global Change Biology 16: 3233-3245.
Le Borgne R, Douillet P, Fichez R, Torréton J-P (2010). Hydrography and plankton temporal variabilities at different time scales in the southwest lagoon of New Caledonia: A review. Marine Pollution Bulletin 61(7-12): 297-308
Lemonnier H, Courties C, Mugnier C, Torréton JP, Herbland A (2010). Nutrient and microbial dynamics in eutrophying shrimp ponds affected or unaffected by vibriosis. Marine Pollution Bulletin, 60(3): 402-411
Li H, Venier P, Prado-Alvárez M, Gestal C, Toubiana M, Quartesan R, Borghesan F, Novoa B, Figueras A & Roch Ph (2010). Expression of Mytilus immune genes in response to experimental challenges varied according to the site of collection. Fish Shellfish Immunology 28: 640-648
Lombard, F., Eloire D., Gobet A., Legendre L., Stemmann L., Dolan J.R., Sciandra A. and Gorsky G. (2010). Experimental and modeling evidence of ciliates-appendicularians interactions. Limnology and Oceanography, 55(1): 77-90
Marras S., Claireaux G., McKenzie D.J., Nelson J.A. (2010). Inter-individual variation and repeatability in aerobic and anaerobic swimming performance of European sea bass (Dicentrarchus labrax, Linnaeus 1758). Journal of Experimental Biology 213: 26 - 32.
Masseret E, Enquebecq, M., Laabir, M., Genovesi, B., Vaquer, A., Avarre, J.-C. (2010). A Simple and Innovative Method for Species Identification of Phytoplankton Cells on Minute Quantities of DNA. Environmental Microbiology Reports 2: 715-719.
Maurice C.F., Bouvier T., Comte J., Guillemette F., del Giorgio P.A. (2010). Seasonal variations of phage life strategies and bacterial physiological states in three northern temperate lakes. Environmental Microbiology 12: 628-641.
Mondal N., Rajkumar M., Sun J., Kundu S., Lyla P.S., Ajmal Khan S. & Trilles J.-P. (2010). Biodiversity of brachish water amphipods (Crustacean) in two estuaries, South-East coast of India. Environmental Monitoring Assessment, published online: 16 January 2010; DOI 10.1007/s 10661-009-1292-
Moreau S., Ferreyra G.A., Mercier B., Lemarchand K., Lionard M., Roy S., Mostajir B., Roy S., van Hardenberg B., Demers S. (2010). Variability of the microbial community in the western Antarctic Peninsula from late fall to spring during a low ice cover year. Polar Biology 33(12): 1599-1614.
Mouchet M., Villeger S., Mason N.W.H., Mouillot D. (2010). Functional diversity measures: an overview of their redundancy and their ability to discriminate community assembly rules. Functional Ecology 24 (4): 867-876.
Pete R, Davidson K, Hart MC, Gutierrez T, Miller AEJ (2010). Diatom derived dissolved organic matter as a driver of bacterial productivity: The role of nutrient limitation. Journal of Experimental Marine Biology and Ecology 391 (1-2): 20-26
Pringault O., Viret H. Duran R. (2010). Influence of microorganisms on the removal of nickel in tropical marine sediments (New Caledonia). Marine Pollution Bulletin 81: 530-541.
Quilchini Y., Foata J., Mouillot D., Mattei J., Marchand B. (2010). The influence of altitude, hydrographic network and season on brown trout parasites in Corsica using indicator species analysis. Journal of Helminthology 84: 13-19.
Ramdane Z, Trilles J.-P., Ju-Shey Ho (2010). Redescription of Caligus uranoscopi Vaissière, 1955 (Copepoda, Caligidae) a rare parasitic copepod from Algeria. Acta Parasitologica 55: 379-385.
Rochelle-Newall E.J., Pringault O., Mari X. (2010). Sticking properties of transparent exopolymeric particles (TEP) during aging and biodegradation. Journal of Plankton Research 32(10):1433-1442.
Rolland JL, Abdelouahab M, Dupont J, Lefevre, F, Bachère E, Romestand B. (2010). Stylicins, a new family of antimicrobial peptides from the Pacific blue shrimp Litopenaeus stylirostris. Molecular Immunology 47 :1269-1277
Romestand B, Rolland JL ,Commeyras A, Coussot G, Desvignes I, Pascal R, Vandenabeele-Trambouze O. (2010). Dendrigraft poly-L-Lysine (DGL) : new non immunogenic artificial carriers for antibody production. Biomacromolecules 11(5): 1169-1173.
Schmitt P, Wilmes M, Pugnière M, Aumelas A, Bachère E, Sahl HG, Schneider T, Destoumieux-Garzón D. (2010). Insight into invertebrate defensin mechanism of action: oyster defensins inhibit peptidoglycan biosynthesis by binding to lipid II. Journal of Biology and Chemistry 17: 29208-16
Shannon Y., Coll M., Yemane D., Jouffre D., Neira S., Betrand A., Diaz E., Shin Y-J. (2010). Comparing data-based indicators across upwelling and comparable systems for communicating ecosystem states and trends. ICES Journal of Marine Science 67: 807-832
Shin Y-J., Bundy A., Shannon L., Simier M., Coll M., Fulton E., Link J., Jouffre D., Ojaveer H., Mackinson S., Heymans J., Raid T. (2010). Can simple be useful and reliable? Using ecological indicators for representing and comparing the states of marine ecosystems. ICES Journal of Marine Science 67: 717-731
Shin Y-J., Shannon L., Bundy A., Coll M., Aydin K., Bez N., Blanchard J., Borges M., Cotter J., Cury P., Diallo I., Diaz E., Heymans J., Hill L., Johannesen E., Jouffre D., Kifani S., Labrosse P., Link J., Mackinson S., Möllmann C., Neira S., Ojaveer H., Khairdine A., Perry I., Thiao D., Yemane D. (2010). Using indicators for evaluating, comparing and communicating the ecological status of exploited marine ecosystems. Part 2: Setting the scene. ICES Journal of Marine Science 67: 692-716
Souchu, P., Bec, B., Smith, V.H., Laugier, T., Fiandrino, A., Benau, L., Orsoni, V., Collos, Y., Vaquer, A. (2010). Patterns in nutrient limitation and chlorophyll-a along an anthropogenic eutrophication gradient in French Mediterranean coastal lagoons. Canadian Journal Fisheries Aquatic Sciences 67: 743-753.
Sucré E., Charmantier-Daures M., Grousset E., Charmantier G., Cucchi-Mouillot P. (2010). - Embryonic occurrence of ionocytes in the sea bass Dicentrarchus labrax. Cell Tissue Research 339: 543-550.
Tine M., Bonhomme F., McKenzie D.J., Durand J.D. (2010). Differential expression of the heat shock protein Hsp70 in natural populations of the tilapia, Sarotherodon melanotheron, acclimatised to a range of environmental salinities. BMC Ecology 10:11
Tine M., McKenzie D.J., Bonhomme F., Durand J.D. (2010). Salinity-related variation in gene expression in wild populations of the black-chinned tilapia from various coastal marine, estuarine and freshwater habitats. Estuarine and Coastal Shelf Science 91: 102-109.
Torréton J.P., Rochelle-Newall E., Jacquet S., Pringault O., Faure V., Briand E. (2010). Variability of primary and bacterial production in a coral reef lagoon (New Caledonia). Marine Pollution Bulletin 61: 335-348.
Toulza, E., Shin, M.-S., Blanc, G., Audic, S., Laabir, M., Collos, Y., Claverie, J.-M., Grzebyk, D. (2010). Gene expression in proliferating cells of the dinoflagellate Alexandrium catenella (Dinophyceae). Applied Environmental Microbiology 76 (13) : 4521-4529.
Touzet N., Davidson K., Pete R., Flanagan K., McCoy G.R., Amzil Z., Maher M., Chapelle A. & Raine R. (2010). Co-Occurrence of the West European (Gr.III) and North American (Gr.I) Ribotypes of Alexandrium tamarense (Dinophyceae) in Shetland, Scotland. Protist 161 (3): 370-384
Trilles J.-P., Justine J-L. (2010). Elthusa epinepheli sp. nov. (Crustacea, Isopoda, Cymothoidae), a branchial parasite of coral reef groupers (Serranidae, Epinephelinae) from off New Caledonia. Acta Parasitologica 55: 177-187.
Trilles J.-P., Randall J E (2010). Redescription of Elthusa emarginata (Bleeker, 1857) (Crustacea, Isopoda, Cymothoidae) type species of the genus Elthusa (Schioedte and Meinert, 1884). Marine Biology Research DOI: 10.1080/17451000.2010.528770.
Villeger S., Ramos Miranda J., Flores Hernandez D., Mouillot D. (2010). Contrasted changes in taxonomic and functional diversity of tropical fish communities after habitat degradation. Ecological Applications 20: 1512-1522.
Weinbauer M.G., Kerros M.E., Motegi C., Wilhartitz I.C., Rassoulzadegan F., Torréton J.P., Mari X. (2010). Bacterial community composition and potential controlling mechanisms along a trophic gradient in a barrier reef system. Aquatic Microbial Ecology, 60:15-28
Widdicombe C.E., Eloire D., Harbour D., Harris R.P., Somerfield P.J. (2010). Long-term phytoplankton community dynamics in the western English Channel. Journal of Plankton Research 32 (5): 643-655.
Winter C., Bouvier T., Weinbauer M.G., Thingstad T.F. (2010). The "killing the winner" hypothesis revisited - trade-offs between competition and defense specialists in unicellular planktonic organisms. Microbiology and Molecular Biology Reviews. 74: 42-57
2009
Abi Khattar Z., Rejasse A, Destoumieux-Garzón D., Escoubas J. M., Sanchis V., Lereclus D., Givaudan A., Kallassy M., Nielsen-Leroux C., Gaudriault S. (2009) The dlt Operon of Bacillus cereus is Required for Resistance to Cationic Antimicrobial Peptides and Virulence in Insects. J. Bacteriol. 191(22):7063-73.
Bettarel Y., Bouvier T., Bouvy M. (2009) Viral persistence in water as evaluated from a tropical/temperate cross-incubation. Journal Plankton Research 31: 909-916.
Bianchini A., Santoni F., Paolini J., Bernardini A.F., Mouillot D., Costa J. (2009). Partitioning the relative contributions of inorganic plant composition and soil characteristics on the quality of Helichrysum italicum subsp. italicum (Roth) G. Don fil. essential oil. Chemistry & Biodiversity 6: 1014-1033.
Bodinier C., Boulo V. Lorin-Nebel C., Charmantier G. (2009). Influence of salinity on the localization and expression of the CFTR chloride channel in the ionocytes of Dicentrarchus labrax during ontogeny. Journal of Anatomy 214: 318-329.
Bodinier C., Lorin-Nebel C., Charmantier G, Boulo V. (2009). Influence of salinity on the localization and expression of the CFTR chloride channel in the ionocytes of juvenile Dicentrarchus labrax exposed to seawater and freshwater. Comparative Biochemistry and Physiology -Part A 153: 345-351.
Bonilla-Findji O., Rochelle-Newall E.J., Weinbauer M.G., Pizay M-D., Kerros M.E., Gattuso J-P. (2009). Effect of seawater-freshwater cross-transplantation on viral dynamics and prokaryotic diversity and productivity. Aquatic Microbial Ecology 54: 1-11.
Bonnet D., Harris R.P., Yebra L., Guilhaumon F., Conway D.V.P., Hirst A.G. (2009). Temperature effects on Calanus helgolandicus (Copepoda: Calanoida) life cycle. Journal of Plankton Research 31: 31-44.
Caro A., Got P., Bouvy M., Troussellier M., Gros O. (2009) Effects of long term starvation of a host bivalve (Codakia orbicularis) and its symbiont population. Applied and Environmental Microbiology 75: 3304-3313.
Ciacci C., Citterio B., Betti M., Caanonico B., Roch. Ph., Canesi L (2009). Functional differential immune responses of Mytilus galloprovincialis to bacterial challenge. Comparative Biochemistry and Physiology Part B 153:365-371.
Ciacci C., Fabri R., Roch Ph., Canesi L. (2009). Seasonal changes in functional parameters of the hemolymph of Mytilus galloprovincialis. Invertebrate Survival Journal 6: 44-48.
Collos, Y., Bec, B., Jauzein, C., Abadie, E., Laugier, T., Lautier, J., Pastoureaud, A., Souchu, P., Vaquer, A. (2009). Oligotrophication and emergence of picocyanobacteria and a toxic dinoflagellate in Thau lagoon, southern France. Journal Sea Research 61: 68-75.
Costa MM, Prado-Alvarez M, Gestal C, Li H, Roch Ph, Novoa B & Figueras A. (2009). Functional and molecular immune response of Mediterranean mussel (Mytilus galloprovincialis) hemocytes against pathogen associated molecular patterns and bacteria. Fish and Shelfish Immunology 26: 515-523.
De Junet A., Abril G., Guérin F., Billy I., de Wit R. (2009). A multi-tracers analysis of sources and transfers of particulate organic matter in a tropical reservoir (Petit Saut, French Guiana). River Research and Applications 25:253-271.
Destoumieux-Garzón, D., Brehelin, M., Bulet, P., Boublik, Y., Girard, P.A., Baghdiguian, S., Zumbihi, R., Escoubas, J.M. (2009). Spodoptera frugiperda X-Tox protein, an immune related defensin rosary, has lost the function of ancestral defensins. PLOSone 4, e6795.
Diouf K., Guilhaumon F., Aliaume C., Ndiaye P., Do Chi T., Panfili J. (2009). Effects of the environment on fish juvenile growth in West African stressful estuaries. Estuarine, Coastal and Shelf Science 83: 115-125.
Dolan JR, Mostajir B, Sime-Ngando T (2009). Rassoulzadegan in Villefranche-sur-Mer and the 'evolution' of marine microbial ecology over the last three decades. Aquatic Microbial Ecology. 57: 221-225
Dorigo U, Lefranc M, Leboulanger C, Montuelle B, Humbert JF (2009). Spatial heterogeneity of periphytic microbial communities in a small pesticide-polluted river. FEMS Microbiol Ecology 67: 491-501.
Esmail S., Ragnar K., Trilles J.-P. & Bariche M. (2009). First occurrence of native Cymothoid parasites on introduced rabbitfishes in the Mediterranean Sea. Acta Parasitologia 54 : 380-384.
Fleury, E., Huvet, A., Lelong, C., de Lorgeril, J., Boulo, V., Gueguen, Y., Bachère, E., Tanguy, A., Moraga, D., Fabioux, C., Lindegue, P., Shaw, J., Reinhardt, R., Prunet, P., Davey, G., Lapegue, S., Sauvage, C., Corporeau, C., Moal, J., Gavory, F., Wincker, P., Moreews, F., Klopp, C., Mathieu, M., Boudry, P., Favrel, P., (2009). Generation and analysis of a 29,745 unique expressed sequence tags from the Pacific oyster (Crassostrea gigas) assembled into a publicity accessible database: the GigasDatabase. BMC Genomics 10, 1-15.
Forquin M.-P., Duvergey H., Proux C., Loux V., Coppée J.-Y., Bonnarme P., Martin-Verstraete I., Vallaeys T. (2009). MLST and CGH analyses for the identification of Brevibacteriaceae. Applied and Environmental Microbiology (sous presse).
Genovesi, B., Laabir, M., Masseret, E., Collos, Y., Vaquer, A., Grzebyk, D. (2009). Dormancy and germination features in resting cysts of Alexandrium tamarense species complex (Dinophyceae) can facilitate bloom formation in a shallow lagoon (Thau, southern France). Journal Plankton Research 31: 1209-1224.
Gopalakrishnan A., Rajkumar M., Ravichandram S., Trilles J.-P. & Vasanthan T.M., 2009. Identification of Parapenaeopsis stylifera (Decapoda, Penaeidae), a new host for Epipenaeon ingens (Isopoda: Bopyridae). Journal of Environmental Biology 30: 1063-1064.
Gueguen Y., Romestand B., Fievet J., Schmitt P., Destoumieux-Garzón D., Vandenbulcke F., Bulet P., Bachère E. (2009). Oyster hemocytes express a proline rich peptide displaying synergistic antimicrobial activity with a defensin. Molecular Immunology 46: 516-522.
Guilhaumon F., Gimenez O., Gaston K.J., Mouillot D. (2009). Reply to Bode and Murdoch: A proper integration of species-area relationship uncertainties into return on investment analyses is needed. Proceedings of the National Academy of Sciences of the United States of America 106:13.
Harris J., Vallaeys T., Garnier-Zarli E., Bousserrhine N. (2009). Effects of Mercury on Soil Microbial Communities in Tropical Soils of French Guyana. Applied Soil Ecology 41:59-68.
Hédouin L., Bustamante P., Churlaud C., Pringault O., Fichez R., Warnau M. (2009). Trends in concentrations of selected metalloid and metals in two bivalves from the SW lagoon of New Caledonia. Ecotoxicology Environmental Safety 72: 372-381.
Humbert J.F., Dorigo U., Cecchi Ph., Leberre B., Debroas D., Bouvy M. (2009) Comparison of the structure and composition of bacterial communities from temperate and tropical freshwater ecosystems. Environmental Microbiology 11: 2339-2350.
Passerat J., P. Got, S. Dukan and P. Monfort (2009). Invasive Heterogeneity of Salmonella typhimurium: Respective Role of Culturable and Viable but Non Culturable Cells. Applied and Environmental Microbiology 75: 5179-5185.
Jamandre B. W., Durand J.-D., Tzeng W.-N. (2009). Phylogeography of the flathead mullet Mugil cephalus in the Northwest Pacific inferred from the mtDNA control region. Journal of Fish Biology 75: 393-407.
Korallo-Vinarskaya N.P., Krasnov B.R., Vinarski M.V., Shenbrot G.I., Mouillot D., Poulin R. (2009). Stability in abundance and niche breadth of gamasid mites across environmental conditions, parasite identity and host pools. Evolutionary Ecology 23: 329-345.
Krasnov B.R., Vinarski M.V., Korallo-Vinarskaya N.P., Mouillot D., Poulin R. (2009). Inferring interactions among parasitic gamasid mites from census data. Oecologia 160:175-185.
Krasteva D., Toubiana M., Hartati S., Kusumawati A., Dubremetz, J.F., Sri-Widada J. (2009). Development of loop-mediated isothermal amplification (LAMP) as a diagnostic tool of toxoplasmosis. Veterinary Parasitology, doi:10.1016/j.vetpar.2009.03.014
Lasram F.B.R., Guilhaumon F., Mouillot D. (2009). Fish diversity patterns in the Mediterranean Sea: Deviations from a mid-domain model. Marine Ecology Progress Series 376: 253-267.
Lasram F.B.R., Mouillot D. (2009). Global warming enhances congruence between endemic and exotic Mediterranean fish fauna. Biological Invasions 11: 697-711.
Leboulanger C., Bouvy M., Pagano M., Dufour R.A., Got P., Cecchi P. (2009). Responses of planktonic microorganisms from tropical reservoirs to paraquat and deltamethrin exposure. Archiv and Environmental Contamination and Toxicology 56: 39-51.
Li H., Toubiana M., Monfort P., Roch Ph. (2009). Influence of temperature, salinity and E. coli tissue content on immune gene expression in mussel: results from a 2005-2008 survey. Developmental and Comparative Immunology. 33: 974-979.
Löfgren, S.E., Smânia, A.J., Fâtima Albino Smânia, E., Bachère, E., Anna Barracco, M. (2009). Comparative activity and stability under salinity conditions of different antimicrobial peptides isolated from aquatic animals. Aquatic Resources 40: 1805-1812.
Loureiro S., Jauzein C., Garcés E., Collos Y., Camp J., Vaqué D. (2009). The significance of organic nutrients to Pseudo-nitzschia delicatissima (Bacillariophyceae) nutrition. Journal of Plankton Research 31: 399-410.
Loureiro, S., Garcés, E., Collos, Y., Vaqué, D., Camp, J. (2009). Effect of marine autotrophic dissolved organic matter (DOM) on Alexandrium catenella in semi-continuous cultures. Journal of Plankton Research 31(11) : 1363-1372.
Masseret E., Grzebyk D., Nagai S., Genovesi-Giunti B., Lasserre B., Laabir M., Collos Y., Vaquer A., Berrebi P. (2009). Unexpected biodiversity among and within populations of the toxic dinoflagellate Alexandrium catenella revealed with nuclear microsatellite markers. Applied and Environmental Microbiology 75: 2037-2045.
Michaud L., Lo Giudice A., Troussellier M., Smedile F., Bruni V., Blancheton J-P. (2009). Phylogenic characterization of the heterotrophic bacterial communities inhabiting a marine recirculating aquaculture system. Journal of Applied Microbiology, 107: 1935-1946.
Mouillot D., Gaston K. J. (2009). Spatial overlap enhances geographic range size conservatism. Ecography 32: 671-675.
Ouattara N., Bodinier C., Nègre-Sadargues G., D'Cotta H., Messad S., Charmantier G., Panfili J., Baroiller J.F. (2009). Changes in gill ionocyte morphology and function following transfer from fresh to hypersaline waters in the tilapia Sarotherodon melanotheron. Aquaculture 290 : 155-164.
Parisi M-G, Li H, Toubiana M, Parrinello N, Cammarata M, Roch Ph. (2009). Polymorphism of mytilin B mRNA is not translated into mature peptide. Molecular Immunology 46:384-392.
Passerat J., Got P., Dukan S., Monfort P. (2009). Respective roles of culturable and viable-but-nonculturable cells in the heterogeneity of Salmonella enterica Serovar Typhimurium invasiveness. Applied and Environnmental Microbiology 75: 5179-5185.
Pringault O., Tesson S, Rochelle-Newall E. (2009). Respiration in the light and bacterio-phytoplankton coupling in a coastal ecosystem. Microbial Ecology 57: 321-334.
Ramdane Z., Bensouilah M.A., & Trilles J.-P. (2009). Etude comparative des Crustacés Isopodes et Copépodes ectoparasites de poissons marins Algériens et Marocains. Cybium 33 : 123-131.
Randrianarivelo R., Sarter S., Odoux E., Brat P., Lebrun M., Romestand B., Menu C., Andrianoelisoa H.S., Raherimandimby M., Danthu P. (2009). Composition and antimicrobial activity of essential oils of Cinnamosma fragans. Food Chemistry 114: 680-684.
Rocklin D., Santoni M.C., Culioli J.M., Tomasini J.A., Pelletier D., Mouillot D. (2009). Changes in the catch composition of artisanal fisheries attributable to dolphin depredation in a Mediterranean marine reserve. ICES Journal of Marine Science 66: 699-707.
Spatharis S., Mouillot D., Do Chi T., Danielidis D., Tsirtsis G. (2009). A niche-based modelling approach to phytoplankton assembly rules. Oecologia 159: 171-180.
Sucré E., Charmantier-Daures M., Grousset E., Charmantier G., Cucchi-Mouillot P. (2009). Early development of the digestive tract (including pharynx) in the European sea bass, Dicentrarchus labrax, embryos and prelarvae. Journal Fish Biology 75, 1302-1322.
Ternengo S., Levron C., Mouillot D., Marchand B. (2009). Site influence in parasite distribution from fishes of the Bonifacio Strait Natural Reserve (Corsica Island, Mediterranean Sea). Parasitology Research 104: 1279-1287
Trape S., Blel H., Panfili J., Durand JD. (2009). Identification of tropical Eastern Atlantic Mugilidae species by PCR-RFLP analysis of mitochondrial 16S rRNA gene fragments. Biochemical Systematics and Ecology 37: 512-518.
Trape S., Durand J.-D., Guilhaumon F.,Vigliola L., Panfili J. (2009). Recruitment patterns of young-of-the-year mugilid fishes in a West African estuary impacted by climate change. Estuarine, Coastal and Shelf Science 85: 357-367.
Venier P, De Pitta C, Bernante F, Varotto L, De Nardi B, Bovo G, Roch Ph, Novoa B, Figueras A, Pallavicini A., Lanfranchi G. (2009). MytiBase: a knowledgebase of mussel (M. galloprovincialis) transcribed sequences. BMC Genomics (Open access) 10: 72 (17p).
Worden A.Z., Lee J.H., Mock T., Rouzé P., Simmons, M.P., Aerts A.L., Allen A.E., Cuvelier M.L., Derelle E., Everett M.V., Foulon E., Grimwood J., Gundlach H., Henrissat B., Napoli C., McDonald S.M., Parker M.S., Rombauts S., Salamov A., Von Dassow P., Badger J.H., Coutinho P.M., Demir E., Dubchak I., Gentemann C., Eikrem W., Gready,J.E., John U., Lanier W., Lindquist E.A., Lucas S., Mayer K.F.X., Moreau H., Not F., Otillar R., Panaud O., Pangilinan J., Paulsen I., Piegu B., Poliakov A., Robbens S., Schmutz J., Toulza E., Wyss T., Zelensky A., Zhou K., Armbrust E.V., Bhattacharya D., Goodenough U.W., Van de Peer Y., Grigoriev I.V. (2009). Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science 324 : 268-272.
Yang Y., Boze H., Chemardin P., Padilla A., Moulin G., Tassanakajon A., Pugnière M., Roquet F., Destoumieux-Garzón D., Gueguen Y., Bachère E., Aumelas A. (2009). NMR structure of rALF-Pm3, an anti-lipopolysaccharide factor from shrimp. Model of the possible lipid A binding site. Biopolymers 91 : 207-220.
2008
Alas A., Öktener A., Iscimen A., Trilles J.-P (2008). New host record Parablennius sanguinolentus (Teleostei, Perciformes, Blenniidae) for Nerocila bivittata (Crustacea, Isopoda, Cymothoidae). Parasitology Research 102 : 645-646.
Anger K., Torres G., Charmantier-Daures M., Charmantier G. (2008). Adaptive diversity in congeneric coastal crabs: ontogenetic patterns of osmoregulation match life-history strategies in Armases spp (Decapoda, Sesarmidae). Journal of Experimental Marine Biology and Ecology 367: 28-36.
Bariche M., Trilles J.-P. (2008). Ceratothoa collaris (Isopoda, Cymothoidae) new to the Eastern Mediterranean Sea, with comments on its distribution and host specificity. Journal of the Marine Biological Association of the United Kingdom 88: 85-93.
Bec B., Collos Y., Vaquer A., Mouillot D., Souchu P. (2008). Growth rate peaks at intermediate cell size in marine photosynthetic picoeukaryotes. Limnology and Oceanography 53: 863-867.
Bersch B., Favier A., Schanda P., Van Aelst S., Vallaeys T., Coves J., Mergeay M., Wattiez R. (2008). Molecular structure and metal-binding properties of the periplasmic CopK protein expressed in Cupriavidus metallidurans CH34 during copper challenge. Journal of Molecular Biology 380(2): 386-403.
Berthet N., Filliol I., Dickinson P, Vallaeys T., Kong KA., Zhang S., Xing G., Turpaz Y., Reinhardt RA., Manuguerra J-C, Old I.G, Cole S.T, Kennedy G.C. (2008). Massively parallel pathogen identification using high-density microarrays. Microbial Biotechnology 1(1): 79-86.
Bettarel Y., Arfi R., Bouvier T., Bouvy M., Briand E., Colombet J., Corbin D., Sime-Ngando T. (2008). Virioplankton distribution and activity in a tropical eutrophicated Bay. Estuarine Coastal and Shelf Science 80: 425-429.
Bonilla-Findji O, Malits A, Lefevre D, Rochelle-Newall E, Lemee R, Weinbauer MG, Gattuso JP (2008) Viral effects on bacterial respiration, production and growth efficiency: Consistent trends in the Southern Ocean and the Mediterranean Sea. Deep-Sea Research Part II-Topical Studies in Oceanography 55:790-800.
Bouvy M., Briand E., Boup M.M., Got P., Leboulanger C., Bettarel Y., Arfi Y. (2008). Effects of sewage discharges on microbial components in tropical coastal waters (Senegal, West Africa). Marine and Freshwater Research 59: 614-626.
Brehelin M., Roch Ph. (2008). Specificity, learning and memory in the innate immune response. Invertebrate Survival Journal 5: 103-109.
Catherine A., Quiblier C., Yéprémian C., Got P., Groleau A., Vinçon-Leite B., Bernard C., Troussellier M. (2008). Collapse of a Planktothrix agardhii perennial bloom and microcystin dynamics in response to reduced phosphate concentrations in a temperate lake. FEMS Microbiology and Ecology 65 : 61-73.
Catherine A., Troussellier M., Bernard C. (2008). Design and application of a stratified sampling strategy to study the regional distribution of cyanobacteria (Ile-de-France, France). Water Research 42: 4989-5001.
Cissoko M., Desnues A., Bouvy M., Sime-Ngando T., Verling E., Bettarel Y. (2008). Effects of freshwater and seawater mixing on virio- and bacterioplankton in a tropical estuary. Freshwater Biology 53: 1154-116.
Conan P., Joux F., Torréton J-P., Pujo-Pay M., Rochelle-Newall E., Mari X. (2008). Impact of solar ultraviolet radiation on bacterio- and phytoplankton activity in a large coral reef lagoon (SW New Caledonia). June 2007. Aquatic Microbial Ecology 52: 83-98.
Cuadrado M., Marques A., Diamant A., Sitja-Bobadilla A, Palenzuela O., Alvarez-Ellitero P., Francesc Padro F., Silvia Crespo S. (2008). Ultrastructure of Enteromyxum leei (Myxozoa), an Enteric Parasite Infecting Gilthead Sea Bream (Sparus aurata) and Sharpsnout Sea Bream (Diplodus puntazzo). Journal of Eukaryotes Microbiology 55(3):178-184.
De Beer D. Bissett A., de Wit R., Jonkers H., Köhler-Rink S., Nam H., Hyo Kim B., Eickert G., Grinstain M. (2008). A microsensor for carbonate ions suitable for microprofiling in freshwater and saline environments. Limnology and Oceanography Methods 6 : 532-541.
De Lorgeril J., Gueguen Y., Goarant C., Goyard E., Mugnier C., Fievet J., Piquemal D., Bachère E. (2008). A relationship between antimicrobial peptide gene expression and capacity of a selected shrimp line to survive a Vibrio infection. Molecular Immunology 45(12): 3438-3445.
De Wit R. (2008). Microbial diversity in the Bassin d'Arcachon coastal lagoon (SW France). Hydrobiologia 614: 5-15.
Dorigo U., Lefranc M., Leboulanger C., Montuelle B., Humbert JF. (2008). Spatial heterogeneity of periphytic microbial communities in a small river polluted by pesticides. FEMS Microbiol Ecology 67: 491-501.
Felten V., Charmantier G., Charmantier-Daures M., Aujoulat F., Geffard O., Garric J. (2008). Physiological and behavioural responses of Gammarus pulex exposed to acid stress. Comparative Biochemistry and Physiology part- C 147: 189-197.
Felten V., Charmantier G., Mons R., Geffard A., Rousselle P., Coquery M., Garric J., Geffard O. (2008). Physiological and behavioural responses of Gammarus pulex (Crustacea Amphipoda) exposed to Cadmium. Aquatic Toxicology 86: 413-425.
Fleurance R.., Sauvegrain C., Marques A., Le BretonA., Guereaud C., Cherel Y., Wyers M. (2008). Histological changes caused by Enteromyxum leei infection in farmed sea brean Sparus aurata. Diseases Aquatic Organims 79: 219-228.
Fraser S.E.M., Dytham C., Mayhew P.J., Mouillot D., Anderson B.J. (2008). Community structure in ichneumonid parasitoids at different spatial scales. Oecologia 157:521-530.
Gestal C., Roch Ph., Renault T., Pallavicini A., Paillard C., Novoa B., Oubella R., Venier P., Figueras A. (2008). Study of diseases and the immune system of bivalves using molecular biology and genomics. Reviews Fisheries Science 16:131-154.
Giffard-Mena I., Lorin-Nebel C., Charmantier G., Castille R., Boulo V. (2008). Adaptation of the sea-bass (Dicentrarchus labrax) to fresh water: role of Aquaporins and Na+/K+-ATPases. Comparative Biochemistry and Physiology part- A 150: 332-338.
Glibert P.M., Azanza R., Burford M., Furuya K., Abal E., Al-Azri A., Al-Yamani F., Andersen P., Beardall J., Berg G.M., Brand L., Bronk D., Brookes J., Burkholder J.M., Cembella A., Cochlan W.P., Collier J., Collos Y., Diaz R., Doblin M., Drennen T., Dyhrman S., Fukuyo Y., Furnas M., Galloway J., Granéli E., Ha D.V. Hallegraeff G., Harrison J., Harrison P.J., Heil C.A., Heimann K., Howarth R., Jauzein C., Kana A.A., Kana T.M., Kim H., Kudela R., Legrand C., Mallin M., Mulholland M., Murray S., O'Neil J., Pitcher G., Qi Y., Rabalais N., Raine R., Seitzinger S., Solomon C., Stoecker D.A., Usup G., Wilson J., Yin K., Zhou M., Zhu M. (2008). Ocean urea fertilization for carbon credits poses high ecological risks. Marine Pollution Bulletin 56: 1049-1056.
Guéguen M., Lassus P., Laabir M., Bardouil M., Baron R., Séchet V., Truquet P., Amzil Z. (2008). Gut passage times in two bivalve molluscs fed toxic microalgae: Alexandrium minutum, A. catenella and Pseudo-nitzschia calliantha. Aquatic Living Ressources 21: 21-29.
Guilhaumon F., Gimenez O., Gaston K.J., Mouillot D. (2008). Taxonomic and regional uncertainty in species-area relationships and the identification of richness hotspots. Proceedings of the National Academy of Sciences of the United States of America 105: 15458-15463.
Guinand B., Rolland JL., Bonhomme F (2008). Genetic structure of the common sole (Solea solea) in the Bay of Biscay: nurseries as units of selection? Estuarine Coastal and Shelf Science. 78 : 316-326.
Jauzein C., Collos Y., Garcés E., Vila M., Maso M. (2008). Short-term temporal variability of ammonium and urea uptake by Alexandrium catenella (Dinophyta) in cultures. Journal of Phycology 44 (5): 1136-1145.
Jauzein, C., Loureiro, S., Garcés, E., Collos, Y. (2008). Interactions between ammonium and urea uptake by 5 strains of Alexandrium catenella (Dinophyta) in cultures. Aquatic Microbial Ecology 53: 271-280.
Knief C., Frances L., Cantet F., Vorholt J. (2008). Cultivation-independent characterization of Methylobacterium populations in the plant phyllosphere by automated ribosomal intergenic spacer analysis (ARISA). Applied and Environmental Microbiology 74: 2218-2228.
Krasnov B.R. Korallo-Vinarskaya M.V., Vinarski M.V., Shenbrot G.I., Mouillot D., Poulin R. (2008). Searching for general patterns in parasite ecology: Host identity vs. environmental influence on gamasid mite assemblages in small mammals. Parasitology 135: 229-242.
Krasnov B.R., Mouillot D., Khokhlova I.S., Shenbrot G.I., Poulin R. (2008). Scale-invariance of niche breadth in haematophagous ectoparasites. Ecography 31: 630-635.
Krasnov B.R., Shenbrot G.I., Khokhlova I.S., Mouillot D., Poulin R. (2008). Latitudinal gradient in niche breadth: empirical evidence from haematophagous ectoparasites. Journal of Biogeography 35: 592-601.
Lasram F.B.R., Tomasini J.A., Romdhane M.S., Do Chi T., Mouillot D. (2008). Ecological correlates of colonization success in Lessepsian fishes. Marine Ecology Progress Series 363: 273-286.
Lasram F.B.R., Tomasini J.A., Romdhane M.S., Do Chi T., Mouillot D. (2008). Historical colonization of the Mediterranean Sea by Atlantic fishes: do biological traits matter? Hydrobiologia 607: 51-62.
Li H., Parisi M-G., Toubiana M., Cammarata M., Roch Ph. (2008). Lysozyme gene expression and hemocytes behaviour in the Mediterranean mussel, Mytilus galloprovincialis, after injection of various bacteria or temperature stresses. Fish Shellfish Immunology 25:143-152.
Löfgren S.E., Miletti L.C., Steindel M., Bachère E., Barracco M.A. (2008). Trypanocidal and leishmanicidal activities of different antimicrobial peptides (AMPs) isolated from aquatic animals. Experimental Parasitologie 118(2):197-202.
Mas S., Roy S., Blouin F., Mostajir B., Therriault J.-C., Nozais C., Demers S. (2008). Diel variations in optical properties of Imantonia rotunda (Haptophyceae) and Thalassiosira pseudonana (Bacillariophyceae) exposed to different irradiance levels. Journal of Phycology, 44: 551-563.
Mason N.W.H., Irz P., Lanoiselée C., Mouillot D., Argillier C. (2008). Evidence that niche specialization explains species-energy relationships in lake fish communities. Journal of Animal Ecology 77: 285-296.
Mason N.W.H., Lanoiselée C., Mouillot D., Wilson J.B., Argillier C. (2008). Does niche overlap control relative abundance in French lacustrine fish communities? A new method incorporating functional traits. Journal of Animal Ecology 77: 661-669.
Masseret E., Sukenik A. (2008). Amplified rDNA Restriction Analysis (ARDRA) for monitoring of potentially toxic cyanobacteria in water samples. Israel Journal of Plant Science 56: 77-84.
Mendoza-Vera M., Kâ S., Cuoc C., Bouvy M., Pagano M. (2008). Decline of Pseudodiaptomus hessei (Copepoda, Calanoida) in two water bodies located in the Senegal River hydrosystem (West Africa): hypotheses and perspectives. Estuarine Coastal and Shelf Science 79: 740-750.
Mouchet M., Guilhaumon F., Villeger S., Mason N.W.H., Tomasini J.A., Mouillot D. (2008). Towards a consensus for calculating dendrogram-based functional diversity indices. Oikos 117: 794-800.
Mouillot D., Culioli J.M., Pelletier D., Tomasini J.A. (2008). Do we protect biological originality in protected areas? A new index and an application to the Bonifacio Strait Natural Reserve. Biological Conservation 141: 1569-1580.
Mouillot D., Krasnov B.R., Poulin R. (2008). High ant intervality explained by phylogenetic constraints in host-parasite webs. Ecology 89: 2043-2051.
Mouillot D., Krasnov B.R., Shenbrot G.I., Poulin R. (2008) Connectance and parasite diet breadth in flea-mammal webs. Ecography 31: 16-20.
Mounier J., Monnet C., Vallaeys T., Arditi R., Sarthou A.S., Hélias A., Irlinger F. (2008). Microbial interactions within a cheese microbial community. Applied Environmental Microbiology 74:172-181.
Nebel C., Romestand B., Negre-Sadargues G., Aujoulat F., Grousset E., Bacal J., Bonhomme F., Charmantier G. (2008) Differential freshwater adaptation in juvenile sea-bass Dicentrarchus labrax: histophysiological basis at the gill and urinary system levels. Journal of Experimental Biology. 208: 3859-3871.
Nogaro G., Charles F., Braga De Mendonca Jr J., Stora G., François-Carcaillet F. (2008). Food supply impacts sediment reworking by Nereis diversicolor. Hydrobiologia 598: 403-408.
Parisi M-G., Li H., Jouvet LBP., Dyrynda E.A., Parrinello N., Cammarata M., Roch Ph. (2008). Differential involvement of mussel hemocyte sub-populations in the clearance of bacteria. Fish and Shellfish Immunology 2008: 834-840.
Poulin R., Luque J.L., Guilhaumon F., Mouillot D. (2008). Species abundance distributions and numerical dominance in gastrointestinal helminth communities of fish hosts. Journal of Helminthology 82: 193-202.
Pringault O., Duran R., Jacquet S., Torréton JP. (2008). Temporal variations of microbial activity and diversity in marine tropical sediments. Microbial Ecology, 55:247-258.
Quiblier C., Leboulanger C., Sané S., Dufour D. (2008). Phytoplankton growth control and risk of cyanobacterial blooms in the lower Senegal River delta region. Water Research 42: 1023-1034.
Ramos Miranda J., Mouillot D., Sosa Lopez A., Do Chi T., Flores Hernandez D. (2008). How much variation can be explained by seasonal, spatial and environmental effects in nekton assemblages of the Terminos lagoon? Aquatic Conservation 18: 508-517.
Rigal F., Chevalier T., Lorin-Nebel C., Charmantier G., Tomasini J.A., Aujoulat F., Berrebi P. (2008). Osmoregulation as a potential factor for the differential distribution of the cryptic gobiids, Pomatoschistus microps and P. marmoratus in French Mediterranean lagoons. Scientia Marina 72(3): 469-476.
Roberts S., Gueguen Y., de Lorgeril J., Goetz F. (2008). Rapid accumulation of an interleukin 17 homolog transcript in Crassostrea gigas hemocytes following bacterial exposure. Developmental & Comparative Immunology 32(9): 1099-104.
Roch Ph., Yang YS., Toubiana M., Aumelas A. (2008). NMR structure of mussel mytilin, and antiviral-antibacterial activities of derived synthetic peptides. Developmental and Comparative Immunology 32:227-238.
Rochelle-Newall E., Mari X., Rouchon C., Torréton J-P., Pringault O. (2008). Zinc induces shifts in microbial carbon flux. Aquatic Microbial Ecology 52:57-68.
Rochelle-Newall EJ., Torréton J-P., Mari X., Pringault O. (2008). Phytoplankton-bacterioplankton coupling in a sub-tropical South Pacific coral reef lagoon. Aquatic Microbial Ecology 50: 221-229.
Sakka Hlaili A., Boutheina Grami B., Niquil N., Gosselin M. , Hamel D., Troussellier M., Hadj Mabrouk H. (2008). The planktonic food web of the Bizerte lagoon (south-western Mediterranean) during summer: I. Spatial distribution under different anthropogenic pressures. Estuarine and Coastal Shelf Science 78 : 61-77.
Somboonwiwat K., Bachère E., Rimphanitchayakit V., Tassanakajon A. (2008). Localization of anti-lipopolysaccharide factor (ALFPm3) in tissues of the black tiger shrimp, Penaeus monodon, and characterization of its binding properties. Developmental & Comparative Immunology 32(10):1170-6.
Spatharis S., Mouillot D., Tsirtsis G., Karydis M., Do Chi T., Danielidis D. (2008). Influence of terrestrial runoff on phytoplankton species richness-biomass relationships: A double stress hypothesis. Journal of Experimental Marine Biology and Ecology 362: 55-62.
Tanguy A., Bierne N., Saavedra C., Pina B., Bachère E., Kube M., Bazin E., Bonhomme F., Boudry P., Boulo V., Boutet I., Cancela L., Dossat C., Favrel P., Huvet A., Jarque S., Jollivet D., Klages S., Lapègue S., Leite R., Moal J., Moraga D., Reinhardt R., Samain J.F., Zouros E., Canario A. (2008). Increasing genomic information in bivalves through new EST collections in four species: development of new genetic markers for environmental studies and genome evolution. Gene 408: 27-36.
Venail P.A., MacLean R.C., Bouvier T., Brockhurst M.A., Hochberg M.E., Mouquet N. (2008). Functional diversity and productivity peak at intermediate levels of dispersal in evolving metacommunities. Nature 452: 210-214.
Villeger S., Mason N., Mouillot D. (2008). New multidimensional functional diversity indices for a multifaceted framework in functional ecology. Ecology 89: 2290-2301.
Villeger S., Mouillot D. (2008). Additive partitioning of diversity including species differences: a comment on Hardy & Senterre (2007). Journal of Ecology. 96: 845-848.
Villeger S., Ramos Miranda J., Flores Hernandez D., Sosa Lopez A., Mouillot D. (2008). Stable trophic structure across coastal nekton assemblages despite high species turnover. Marine Ecology Progress Series 364: 135-146.
Zeman F.A., Gilbin R., Alonzo F., Pradines C., Garnier-Laplace J., Aliaume C. (2008). Effects of waterborne uranium on survival, growth, reproduction and physiological processes of the freshwater cladoceran Daphnia magna. Aquatic Toxicology 86: 370-378.
2007
Anderson B.J., Mouillot D. (2007). Influence of scale and resolution on niche apportionment rules in saltmeadow vegetation. Aquatic Biology 1: 195-204.
Bacher A., Omoregie E., De Wit R., Jonkers H.M. (2007). Diversity and function of Chloroflexus-like bacteria in a hypersaline microbial mat: phylogenetic characterization and impact on aerobic respiration. Applied and Environmental Microbiology 73: 3975-3983.
Beaugrand G., Lindley J.A., Helaouet P., Bonnet D. (2007). Macroecological study of Centropages typicus in the North Atlantic Ocean. Progress in Oceanography 72: 259-273.
Bettencourt R., Roch Ph., Stefanni S., Rosa D., Colaco A., Santos R. (2007). Deep sea immunity: unveiling immune constituents from hydrothermal vent mussel, Bathymodiolus azoricus. Marine Environmental Research 64: 108-127.
Bonnet D., Harris RP., Lopez-Urrutia A., Halsband-Lenk C., Greve W., Valdes L., Hirche HJ., Engel M., Alvarez-Ossorio MT. (2007). Comparative seasonal dynamics of Centropages typicus at seven coastal monitoring stations in the North Sea, English Channel and Bay of Biscay. Progress in Oceanography 72: 233-248.
Bourret A, Martin Y., Troussellier M. (2007). Modelling the response of microbial food web to an increase of atmospheric CO2 partial pressure in a marine Mediterranean coastal ecosystem (Brusc Lagoon, France). Ecological Modeling 208 : 189-204.
Boutet I., Lorin-Nebel C., de Lorgeril J., Guinand B. (2007). Molecular characterisation of prolactin and analysis of extrapituitary expression in the European sea bass Dicentrarchus labrax under various salinity conditions. Comparative Biochemistry and Physiology part D 2(1): 74-83.
Bouvier T., del Giorgio A.P. (2007). Key role of selective viral-induced mortality in determining marine bacterial community composition. Environmental Microbiology 9 : 287-297.
Bouvier T., del Giorgio A.P., Gasol J.M. (2007). A comparative study of the cytometric characteristics of high and low nucleic-acid bacterioplankton cells from different aquatic ecosystems. Environmental Microbiology 9: 2050-2066.
Cappello S., Caruso G., Zampino D., Monticelli L.S., Maimone G., Tripodo B., Troussellier M. Yakimov M., Giuliano L. (2007). Microbial community dynamics during assays of an harbour oil spill bioremediation: a microscale simulation study. Journal of Applied Microbiology 102: 184-194.
Carlotti F., Bonnet D., Halsband-Lenk C. (2007). Growth and development rates of Centropages typicus. Progress in Oceanography 72: 164-194.
Caro A., Gros O., Got P., De Wit R., Troussellier M. (2007). Characterization of the population of the sulfur-oxidizing symbiont of Codakia orbicularis (Bivalvia, Lucinidae) by single cell analyses. Applied and Environmental Microbiology 73: 2101-2109.
Carriel-Gomes M.C., Kratz J.M., Barracco M.A., Bachère E., Monte Barardi C.R., Oliveira Simões C.M. (2007). In vitro antiviral activity of antimicrobial peptides against herpes simplex virus 1, adenovirus, and rotavirus. Memorias do Instituto Oswaldo Cruz 102:469-472.
Cellura C., Toubiana M., Parrinello N., Roch Ph. (2007). Specific expression of antimicrobial and HSP70 genes in response to heat-shock and several bacterial challenges in mussels. Fish Shellfish Immunology 22:340-350.
Cieluch U., Anger K., Charmantier-Daures M., Charmantier G. (2007). Osmoregulation and immunolocalization of Na+/K+-ATPase during the ontogeny of the mitten crab, Eriocheir sinensis (Decapoda, Grapsoidea). Marine Ecology Progress Series 329: 169-178.
Collos Y., Vaquer A., Laabir M., Abadie E., Laugier T., Pastoureaud A. (2007). Contribution of several nitrogen sources to growth of Alexandrium catenella during blooms in Thau lagoon, Southern France. Harmful Algae 6: 781-789.
Davidson K., Gilpin L. C., Hart M., Fouilland E., Mitchell E., Álvarez Calleja I., Laurent C., Miller A. E. J. and Leakey R. J. G. (2007). The influence of the balance of inorganic and organic nitrogen on microbial food webs trophic dynamics. Limnology and Oceanography 52: 2147-2163.
Dorigo U., Leboulanger C., Bérard A., Bouchez M., Humbert J.F., Montuelle B. (2007). Lotic biofilm community structure and tolerance along a pesticide contamination gradient in a vineyard area. Aquatic Microbial Ecology 50:91-102.
Duponchelle F., Lino F., Hubert N., Panfili J., Renno J.-F., Baras E., Torrico J.P., Dugué R., Nuñez J. (2007). Environment-related life history trait variations of the red-bellied piranha, Pygocentrus nattereri, in two river basins of the Bolivian Amazon. Journal of Fish Biology 71: 1113-1134.
Duquesne S., Destoumieux-Garzón D., Peduzzi J., Rebuffat S. (2007). Microcins, gene-encoded antibacterial peptides from enterobacteria. Natural Product Report 24:708-734.
Duquesne S., Destoumieux-Garzón D., Zirah S., Goulard C., Peduzzi J., Rebuffat S. (2007). Two Enzymes Catalyze the Maturation of a Lasso Peptide in Escherichia coli. Chemistry & Biology 14:793-803.
Fouilland E., Gosselin M., Rivkin R.B., Vasseur C., Mostajir B. (2007). Nitrogen uptake by heterotrophic bacteria and phytoplankton in Arctic surface waters. Journal of Plankton Research 29: 369-376.
Fouilland E., Leakey, R.J.G., Jones K., Slater J., Alvarez Calleja I. (2007). The response of a planktonic microbial community to sudden mixing conditions in temperate coastal waters: importance of light regime and nutrient enrichment. Journal of Experimental Marine Biology and Ecology 351: 211-225.
Garneau M.-E, Gosselin M., Klein B., Tremblay J.-E., Fouilland E. (2007). New and regenerated production during a late summer bloom in an Arctic polynya. Marine Ecology Progress Series 345: 13-26.
Genovesi-Giunti B., Mouillot D., Vaquer A., Laabir M., Pastoureaud A. (2007). Towards an optimal sampling strategy for Alexandrium catenella (Dinophycea) benthic resting cysts. Harmful Algae 6: 837-848.
Giffard-Mena I., Boulo V., Aujoulat F., Fowden H., Castille R., Charmantier G., Cramb G. (2007). Aquaporin molecular characterization in the sea-bass (Dicentrarchus labrax): The effect of salinity on AQP1 and AQP3 expression. Comparative Biochemistry and Physiology part A 148: 430-444.
Gilbert F., Hulth S., Grossi V., Poggiale J.C., Derosiers G., Rosenberg R., Gerino M., François-Carcaillet F., Michaud E., Stora G. (2007). Sediment reworking by marine benthic species from the Gullmar Fjord (Western Sweden): Importance of faunal biovolume. Journal of Experimental Marine Biology and Ecology 348:133-144.
Gonzalez M., Gueguen Y., Desserre G., de Lorgeril J., Romestand B., Bachère E. (2007). Molecular characterization of two isoforms of defensin from hemocytes of the oyster Crassostrea gigas. Developmental & Comparative Immunology 31: 332-339.
Gonzalez M., Gueguen Y., Destoumieux-Garzon D., Romestand B., Fievet J., Pugniere M., Roquet F., Escoubas JM., Vandenbulcke F., Levy O., Sauné L., Bulet P., Bachère E. (2007). First evidence of a Bactericidal Permeability Increasing protein en an invertebrate, the oyster Crassostrea gigas Cg-BPI. PNAS 104 :17759-17764.
Guiral D., Rougier C. (2007). Trap size and prey selection of two coexisting bladderwort (Utricularia) species in a pristine tropical pond (French Guiana) at different trophic levels. Annales de Limnology 43 :147-159.
Hernandez-Herrera R.I., Chappe-Bonnichon V., Roch P., Sri Widada J. , Bonami J.R. (2007). Partial susceptibility of the SSN-1 fish cell line to a crustacean virus: a defective replication study. Journal of Fish Diseases 30: 673-679.
Hirst A., Bonnet D., Harris R (2007). Seasonal dynamics and mortality of Calanus helgolandicus over two years at a site in the English Channel. Marine Ecology Progress Series 340: 189-205.
Irz P., Michonneau F., Oberdorff T., Whittier T.R., Lamouroux N., Mouillot D., Argillier C. (2007). Fish community comparisons along environmental gradients in lakes of France and Northeast U.S.A. Global Ecology & Biogeography 16: 350-366.
Jayasundara N., Towle D.W., Weihrauch D., Spanings-Pierrot C. (2007). Gill-specific transcriptional regulation of Na++K+-ATPase alpha-subunit in the euryhaline shore crab Pachygrapsus marmoratus: Sequence variants and promoter structure. Journal of Experimental Biology 210: 2070-2081.
Jenny M.J., Chapman R.W., Mancia A., Chen Y.A., McKillen D.J., Trent H., Lang P., Escoubas J.M., Bachere E., Boulo V., John Liu Z., Gross P., Cunningham C., Cupit P.M., Tanguy A., Guo X., Moraga D., Boutet I.,
Huvet A., De Guise S., Almeida J.S., Warr G. (2007). A cDNA microarray for Crassostrea virginica and C. gigas. Marine Biotechnology 9: 577-591.
Korallo N.P., Vinarski M.V., Krasnov B.R., Shenbrot G.I., Mouillot D., Poulin R. (2007). Are there general rules governing parasite diversity? Small mammalian hosts and gamasid mite assemblages. Diversity & Distributions 13: 353-360.
Laabir M., Amzil Z., Lassus P., Masseret E., Tapilatu Y., De Vargas R., Grzebyk D. (2007). Viability, growth and toxicity of Alexandrium catenella and Alexandrium minutum (Dinophyceae) following ingestion and gut passage in the oyster Crassostrea gigas. Aquatic Living Resources 20: 51-57.
Mari X., Rochelle-Newall E., Torréton J.-P., Pringault O., Jouon A. (2007). Water residence time: a regulatory factor of the DOM to POM transfers efficiency. Limnology and Oceanography 52(2): 808-819.
Marquis E., Niquil A., Delmas D., Hartmann H.J., Bonnet D., Carlotti F., Herbland A., Labry C., Sautour B., Laborde P., Vézina A., Dupuy C. (2007). Inverse analysis of the planktonic food web dynamics related to phytoplankton bloom development on the continental shelf of the Bay of Biscay, French coast. Estuarine Coastal and Shelf Science 73: 223-235.
Mason N.W.H., Lanoiselée C., Mouillot D., Irz P., Argillier C. (2007). Functional characters combined with null models reveal inconsistency in mechanisms of species turnover in lacustrine fish communities. Oecologia. 153: 441-452.
Mathieu M., Leflaive J., Ten-Hage L., de Wit R., Buffan-Dubau E. (2007). Free-living nematodes affect oxygen turn-over of artificial diatom biofilms. Aquatic Microbial Ecology 49:281-291.
Montagnani C., Avarre J.C., de Lorgeril J., Quiquand M., Boulo V., Escoubas J.M. (2007). First evidence of the activation of Cg-timp, an immune response component of pacific oysters, through a damage-associated molecular pattern pathway. Developmental & Comparative Immunology 31:1-11.
Mouillot D. (2007). Niche-assembly vs. dispersal-assembly rules in coastal fish metacommunities: implications for a biodiversity management in brackish lagoons. Journal of Applied Ecology 44: 760-767.
Mouillot D., Dumay O., Tomasini J.A. (2007). Limiting similarity, niche filtering and functional diversity in brackish lagoon fish communities. Estuarine Coastal and Shelf Science 71: 443-456.
Mouillot D., Gaston K.J. (2007). Geographic range size heritability: what do neutral models with different modes of speciation predict? Global Ecology & Biogeography 16: 367-380.
Mouillot D., Mason N.W.H., Wilson J.B. (2007). Is the abundance of species determined by their functional traits? A new method with a test using plant communities. Oecologia 152: 729-737.
Nouguier J., Mostajir B., Le Floc'h E., Vidussi F. (2007). An automatically operated system for simulating global change temperature and ultraviolet B radiation increases: application to the study of aquatic ecosystem responses in mesocosm experiments. Limnology and Oceanography Methods 5: 269-279.
Oberhaus L., Briand JF, Leboulanger C., Jacquet S., Humbert JF. (2007). Comparative effects of the quality and quantity of light and of temperature on the growth of Planktothrix agardhii and P. rubescens. Journal of Phycology 43: 1191-1199.
Pernice M., Destoumieux-Garzón D., Peduzzi J., Rebuffat S., Boucher-Rodoni R. (2007). Identification of a Vibrio strain producing antimicrobial agents in the excretory organs of Nautilus pompilius (Cephalopoda, Nautiloidea). Reviews in Fish Biology and Fisheries 17:197-205.
Ramdane Z., Abdelkrim M., Trilles J.-P. (2007). Les Cymothoidae (Crustacea, Isopoda, Flabellifera) de la faune Algérienne. Belgian Journal and Zoology 137 (1): 67-74.
Rolland JL., Bonhomme F., Lagardere F., Guinand B. (2007). Population structure of the common sole (Solea solea) in the Northeastern Atlantic and the Mediterranean Sea: revisiting the divide with EPIC markers. Marine Biology 151 (1): 327-341.
Salerno G., Parrinello N., Roch Ph., Cammarata M. (2007). cDNA sequence and tissue expression of an antimicrobial peptide, dicentracin; a new component of the moronecidin family isolated from head kidney leukocytes of sea bass, Dicentrarchus labrax. Comparative and Biochemical Physiology Part B 146:521-529.
Samain JF., Dégremont L., Soletchnik P., Haure J., Bédier E., Ropert M., Moal J., Huvet A., Bacca H., Van Wormhoudt A., Delaporte M., Costil K., Pouvreau S., Lambert C., Boulo V., Soudant P., Nicolas J.L., Le Roux F., Renault T., Gagnaire B. , Geret F., Boutet I., Burgeot T., Boudry P. (2007). Genetically based resistance to summer mortality in the Pacific oyster (Crassostrea gigas) and its relationship with physiological, immunological characteristics and infection processes. Aquaculture 268:227-243.
Sasal P., Mouillot D., Fichez R., Chifflet S., Kulbicki M. (2007). The use of fish parasites as biological indicators of anthropogenic influences in coral-reef lagoons: a case study of Apogonidae parasites in New-Caledonia. Marine Pollution Bulletin 54: 1697-1706.
Serrano L., Towle D.W., Charmantier G., Spanings-Pierrot C. (2007). Expression of Na+/K+-ATPase ?-subunit mRNA during embryonic development of the crayfish Astacus leptodactylus. Comparative and Biochemical Physiology D 2: 126-134.
Sosa Lopez A., Mouillot D. (2007). Spatiotemporal segregation regulates species richness along biomass gradients in coastal fish assemblages. Marine Ecology Progress Series 342: 217-226.
Sosa Lopez A., Mouillot D., Ramos Miranda J., Flores Hernandez D., Do Chi T. (2007). Fish species richness decreases with salinity in tropical coastal lagoons. Journal of Biogeography 34: 52-61.
Spatharis S., Tsirtsis G., Danielidis D., Do Chi T., Mouillot D. (2007). Effects of pulsed nutrient supply on phytoplankton assemblage structure and blooms in an enclosed coastal area. Estuarine Coastal and Shelf Science 73: 807-815.
Sudhakaran R., Ishaq Ahmed V.P., Haribabu P., Mukherjee S.C., Sri Widada J., Bonami J.R., Sahul Hameed A.S. (2007). Experimental vertical transmission of Macrobrachium rosenbergii nodavirus (MrNV) and extra small virus (XSV) from brooders to progeny in Macrobrachium rosenbergii and Artemia. Journal of Fish Diseases 30: 27-35.
Suggett D. J., Le Floc'h E., Harris G. N., Leonardos N., Geider R. J. (2007). Different strategies of photoacclimation by two strains of Emiliana huxleyi (Haptophyta). Journal of Phycology 43 (6): 1209-1222.
Tine M., de Lorgeril J., Panfili J., Diop K., Bonhomme F., Durand J.D. (2007). Growth hormone and Prolactin-1 gene transcription in natural populations of the black-chinned tilapia Sarotherodon melanotheron acclimatised to different salinities. Comparative Biochemistry and Physiology-Part B, 147: 541-549.
Tirapé A., Bacque C., Brizard R., Vandenbulcke F., Boulo V. (2007). Expression of immune-related genes in the oyster Crassostrea gigas during ontogenesis. Developmental & Comparative Immunology 31:859-873.
Torres G., Charmantier-Daures M., Chifflet S., Anger A. (2007). Effects of long-term exposure to different salinities on the location and activity of Na+-K+-ATPase in the gills of juvenile mitten crab, Eriocheir sinensis. Comparative Biochemistry and Physiology Part A 147: 460-465.
Torréton J-P., Rochelle-Newall E., Jouon A., Faure V., Jacquet S., Douillet P. (2007). Correspondence between the distribution of hydrodynamic time parameters and the distribution of biological and chemical variables in a semi-enclosed coral reef lagoon. Estuarine Coastal and Shelf Science 74(4): 766-776.
Trilles J-P. (2007). Olencira praegustator (Crustacea, Isopoda, Cymothoidae) parasitic on Brevoortia species (Pisces, Clupeidae) from the South-eastern coast of North America: review and redescription. Marine Biology Research 3: 296-311.
Tsogas I., Theodossiou T., Sideratou Z., Paleos C.M., Collet H, Rossi J.C., Romestand B., Commeyras A. (2007) Interaction and transport of Poly 1-lysine Dendrigrafts through Liposomal and cellular Membranes: The Role of Generation and Surface. Biomacromolecules, 8:3263-3270.
Vassiliadis G., Peduzzi J., Zirah S., Thomas X., Rebuffat S, Destoumieux-Garzón D. (2007). Insight into siderophore-peptide biosynthesis: Enterobactin is a precursor for microcin E492 post-translational modification. Antimicrobial Agents Chemotherapy 51: 3546-3553.
Zhang S, Bonami J.R. (2007). A Roni-like virus associated with mortalities of the freshwater crab, Eriocheir sinensis Milne Edwards, cultured in China, exhibiting "sigh disease" and black gill syndrome. Journal of Fish Diseases 30: 181-186.
2006
Basset A., Sabetta L., Fonnesu A., Mouillot D., Do Chi T., Viaroli P., Reizopoulou S., Carrada G.C. (2006). Typology in Mediterranean transitional waters: new challenges and perspectives. Aquatic Conservation. 16: 441-455.
Belzile C., Demers S., Ferreyra G.A., Schloss I.R., Nozais C., Lacoste C., Mostajir B., Roy S., Gosselin M., Pelletier E., Gianesella S.M.F., Diaz S., Vernet M. (2006). UV effects on marine planktonic food-webs: A synthesis of results from mesocosm studies. Photochemistry and Photobiology 82: 850-856.
Berger C., Ba N, Gugger M, Bouvy M, Rusconi F, Couté A., Troussellier M, Bernard C. (2006). Dynamics and toxicity of Cylindrospermopsis raciborskii in lake Guiers (Senegal, West Africa). FEMS Microbiology Ecology 57: 355-366.
Berrebi P, Lasserre B, Barbisan F, Zane L. (2006). Isolation of microsatellite loci and cross-species amplifications in three gobiid fish of the genus Pomatoschistus. Molecular Ecology Notes 6 (3): 724-727.
Berrebi P., Retif X., Fang F., Zhang C.G. (2006). Population structure and systematics of Opsariichthys bidens (Osteichthyes: Cyprinidae) in south-east China using a new nuclear marker: the introns (EPIC-PCR). Biological Journal of the Linnean Society, 87: 155-166.
Bettarel Y., Bouvy M., Dumont C., Sime-Ngando T. (2006). Virus-bacteria interactions in water and sediment of West African inland aquatic systems. Applied and Environnmental Microbiology 72: 5274-5282.
Bonnet D., Harris RP, Hay S., Ingvarsdottir A., Simon O. (2006). Histological changes of the digestive epithelium in Calanus finmarchicus: an index for diapause? Marine Biology 151 : 313-326.
Bonnichon V., Lightner, D.V., Bonami J.R. (2006). Viral interference between infectious hypodermal and hematopoietic necrosis virus and white spot syndrome virus in Litopenaeus vannamei. Diseases of Aquatic Organisms 72, 179-184.
Bouvy M., Ba N., Samba K., Seyni S., Pagano M., Arfi R.. (2006) Phytoplankton community structure and species assemblage succession in a shallow tropical lake (Lake Guiers, Senegal, West Africa). Aquatic Microbial Ecology 45: 147-161.
Bouvy M., Pagano M., M'Boup M., Got P., Troussellier M. (2006). Functional structure of microbial food-web in the Senegal River estuary (West Africa): impact of metazooplankton. Journal of Plankton Research 28: 195-207.
Brehmer P., Do Chi T., Mouillot D. (2006). Amphidromous fish school migration revealed by combining fixed sonar monitoring (horizontal beaming) with fishing data. Journal of Experimental Marine Biology and Ecology 334: 139-150.
Cappello S., Caruso G., Zampino D., Yakimov M., Monticelli1 L.S., G. Maimone G., Tripodo B., M. Troussellier M., Giuliano L. (2006). Microbial community dynamics during assays of an harbour oil spill bioremediation: a microscale simulation study. Journal of Applied Microbiology 102: 184-194.
Cellura C., Toubiana M., Parrinello N., Roch Ph. (2006). HSP70 gene expression in Mytilus galloprovincialis hemocytes is triggered by moderate heat shock and Vibrio anguillarum, but not by V. splendidus or Micrococcus lysodeikticus. Developmental and Comparative Immunology 30: 984-997.
Collos Y., Lespilette, M., Vaquer A., Laabir M., Pastoureaud, A. (2006). Uptake and accumulation of ammonium by Alexandrium catenella during nutrient pulses. African Journal of Marine Science 28 (2): 313-318.
De la Rosa-Vélez J., Cedano-Thomas Y., Cid-Becerra J., Méndez-Payán J.C., Vega-Pérez C., Zambrano-García J., Bonami J.R. (2006). Presumptive detection of the yellow head virus by reverse- transcriptase-polymerase chain reaction and dot-blot hybridization in Litopenaeus vannamei and L. stylirostris cultured on the northwest coast of Mexico. Journal of Fish Disease 29: 717-726.
De Wit R., Bouvier T. (2006). "Everything is everywhere, but, the environment selects"; what did Baas-Becking and Beijerinck really say? Environmental Microbiology 8: 755-758.
Diouf K., Panfili J., Labonne M., Aliaume C., Tomás J., Do Chi T. (2006). Effects of salinity on strontium:calcium ratios in the otoliths of the West African black-chinned tilapia Sarotherodon melanotheron in a hypersaline estuary. Environmental Biology of Fishes, 77(1): 9-20.
Dolan JR., Jacquet S., Torréton J.P. (2006). Comparing taxonomic and morphological biodiversity of tintinnids (planktonic ciliates) of New Caledonia. Limnology and Oceanography 51(2): 950-958.
Dufour P., Sarazin G., Quiblier C., Sane S., Leboulanger C. (2006). Cascading nutrient limitation of the cyanobacteria Cylindrospermopsis raciborskii in a Sahelian lake (North Senegal). Aquatic Microbial Ecology 44: 219-230.
Faure V., Pinazo C., Torréton J.-P., Douillet P. (2006). Relevance of various formulations of phytoplankton Chlorophyll a: Carbon ratio in a 3D marine ecosystem model. Comptes Rendus Biologies 329 (10): 813-822.
Fernandez C., Pasqualini V., Boudouresque C.F., Johnson M., Ferrat L., Caltagirone A., Mouillot D. (2006). Effect of an exceptional rainfall event on the sea urchin (Paracentrotus lividus) stock and seagrass distribution in a Mediterranean coastal lagoon. Estuarine Coastal and Shelf Science 68: 259-270.
Ferreyra GA, Mostajir B., Demers S., Schloss I.R., Chatila K., Ferrario M., Sargian P., Roy S., Prod'homme J. (2006). Ultraviolet B radiation effects on structure and function of lower levels of the marine planktonic food web. Photochemistry & Photobiology 82: 887-897.
Foata J., Mouillot D., Culioli J.L., Marchand B. (2006). Influence of season and host age on wild boar parasites in Corsica using indicator species analysis. Journal of Helminthology 80: 41-45.
Gautret P., De Wit R., Camoin G., Golubic S. (2006). Are environmental conditions recorded by the organic matrices associated with precipitated calcium carbonate in cyanobacterial microbialites? Geobiology 4: 93-107.
Genovesi-Giunti B., Laabir M., Vaquer A. (2006). The benthic resting cyst: a key actor in harmful dinoflagellate blooms - a review. Vie Milieu 56 (4): 327-337.
Jacquet S., Delesalle B., Torréton J.-P., Blanchot J. (2006). Response of phytoplankton communities to increased anthropogenic influences (southwestern lagoon, New Caledonia). Marine Ecology Progress Series 320: 65-78.
Ka S., Pagano M., Ba N., Bouvy M., Leboulanger C., Arfi R., Thiaw O.T., N'Dour E.H.M., Corbin D., Defaye D., Cuoc C., Kouassi E. (2006). Zooplankton distribution related to environmental factors and phytoplankton in a shallow tropical lake (Lake Guiers, Senegal, West Africa). International Revue für Hydrobiology 91: 389-405.
Krasnov B.R., Morand S., Mouillot D., Shenbrot G.I., Khokhlova I.S., Poulin R. (2006). Resource predictability and host specificity in fleas: the effect of host body mass. Parasitology 133: 81-88.
Krasnov B.R., Shenbrot G.I., Mouillot D., Khokhlova I.S., Poulin R. (2006). Ecological characteristics of flea species relate to their suitability as plague vectors. Oecologia 149: 474-481.
Lam-Hoai T., Guiral, D., Rougier C. (2006). Seasonal change of community structure and size spectra of zooplankton in the Kaw River estuary (French Guiana). Estuarine Coastal and Shelf Science 68 (1-2): 47-61.
Leboulanger C., Quiblier C., Dufour P. (2006). Rapid assessment of multiple-limiting factors of phytoplankton biomass: bioassays, in vivo chlorophyll-a fluorescence, and factorial design. Archiv für Hydrobiology 166: 433-451.
Lomstein B. Aa., Bonne Guldberg L., Amtoft Neubauer A.T., Hansen J., Donnelly A.P., Herbert R.A., Viaroli P., Giordani G., Azzoni R., De Wit R., Finster K. (2006). Benthic decomposition of Ulva lactuca: a controlled laboratory experiment. Aquatic Botany 85: 271-281.
Ludwig R., Pringault O., De Wit R., De Beer D., Jonkers H.M. (2006). Limitation of oxygenic photosynthesis and oxygen consumption by phosphate and organic nitrogen in a hypersaline microbial mat: A microsensor study. FEMS Microbiology Ecology 57: 9-17.
Melena J., Bayot B., Betancourt I., Amano Y., Panchana F., Alday, V., Calderón J., Stern S., Roch P., Bonami J.R. (2006). Does pre-exposure to IHHNV or to inactivated WSSV confer a protection against White Spot Syndrome Virus (WSSV) in Penaeus vannamei post-larvae? Journal of Fish Diseases 29:589-600.
Melia P, Bevacqua D, Crivelli AJ, De Leo GA, Panfili J, Gatto M (2006). Age and growth of Anguilla in the Camargue lagoons. Journal of Fish Biology 68:876-890.
Melia P, Bevacqua D, Crivelli AJ, Panfili J, De Leo GA, Gatto M (2006). Sex differentiation of the European eel in brackish and freshwater environments: a comparative analysis. Journal of Fish Biology 69:1228-1235.
Momo F., Ferrero E., Eöry M., Esusy M., Iribarren J., Ferreyra G.A., Schloss I.R., Mostajir B., Demers S. (2006). The whole is more than the sum of its parts: modeling community level effects of UVR in marine ecosystems. Photochemistry and Photobiology 82: 903-908.
Mouillot D., Krasnov B.R., Shenbrot G.I., Gaston K.J., Poulin R. (2006). Conservatism of host specificity in parasites. Ecography 29: 596-602.
Mouillot D., Mouquet N. (2006). Species richness peaks for intermediate levels of biomass in a fractal succession with quasi-neutral interactions. Oikos 115: 349-357.
Mouillot D., Spatharis S., Reizopoulou S., Laugier T., Sabetta L., Basset A., Do Chi T. (2006). Alternatives to taxonomic-based approaches to assess changes in transitional water communities. Aquatic Conservation 16: 469-482.
Muñoz G., Mouillot D., Poulin R. (2006). Testing the niche apportionment hypothesis with parasite communities: is random assortment always the rule? Parasitology 132: 717-724.
Nieto Penalver C.G., Cantet F., Morin D., Haras D., Vorholt J.A.. (2006). A Plasmid-Borne Truncated luxI Homolog Controls Quorum-Sensing Systems and Extracellular Carbohydrate Production in Methylobacterium extorquens AM1. Journal of Bacteriology 188:7321-7324.
Nieto Penalver C.G., Morin D., Cantet F., Saurel O., Milon A., Vorholt J.A. (2006). Methylobacterium extorquens AM1 produces a novel type of acyl-homoserine lactone with a double unsaturated side chain under methylotrophic growth conditions. FEBS Letter. 580:561-567.
Nogaro, G., Mermillod-Blondin F., François-Carcaillet F., Gaudet J.P., Lafont J.P., Gibert J. (2006). Invertebrate bioturbation can reduce the clogging of sediment: an experimental study using infiltration sediment columns. Freshwater Biology 51 (8): 1458-1473.
Pagano M., Champalbert G., Aka M., Kouassi E., Arfi R., Got P., Troussellier M., N'Dour E.H, Corbin D., Bouvy M. (2006). Herbivorous and microbial grazing pathways of metazooplankton in the Senegal River estuary (West Africa). Estuarine Coastal and Shelf Science 67: 369-381.
Panfili J., Thior D., Ecoutin J.M., Ndiaye P., Albaret J.J. (2006). Influence of salinity on the size at maturity for fish species reproducing in contrasting West African estuaries. Journal of Fish Biology 69:95-113.
Pillai D., Bonami J.R., Sri Widada J. (2006). Rapid detection of Macrobrachium rosenbergii nodavirus (MrNV) and extra small virus (XSV), the pathogenic agents of White Tail Disease of Macrobrachium rosenbergii (De Man), by loop-mediated isothermal amplification. Journal of Fish Diseases 29: 275-283.
Poulin R., Krasnov B.R., Shenbrot G.I., Mouillot D., Khokhlova I.S. (2006). Evolution of host specificity in fleas: is it directional and irreversible? International Journal for Parasitology 36: 185-191.
Poulos B.T., Tang K.F.J., Pantoja C.R., Bonami J.R., Lightner D.V. (2006). Purification and characterization of infectious myonecrosis virus of penaeid shrimp. Journal of General Virology 87: 987-996.
Rougier C., Pourriot R. (2006). On some rare and new species of rotifers (Digononta: Bdelloida, Monogononta: Ploima and Flosculariaceae) in the Kaw River estuary (French Guiana). Zoosystema 28 (1): 5-16.
Stolte W., Balode M., Carlsson, P., Grzebyk D., Janson S., Lips I., Panosso R., Ward C.J., Granéli E. (2006). Stimulation of nitrogen-fixing cyanobacteria in a Baltic Sea plankton community by land-derived organic matter or iron addition. Marine Ecology Progress Series 327: 7182.
Vincent C., Mouillot D., Lauret M., Do Chi T., Troussellier M., Aliaume C. (2006). Contribution of exotic species, environmental factors and spatial components to the macrophyte assemblages in a Mediterranean lagoon (Thau lagoon, Southern France). Ecological Modelling 193: 119-131.
Vincent C., Mouillot D., Lauret M., Do Chi T., Troussellier M., Aliaume C. (2006). Contribution of exotic species, environmental factors and spatial components to the macrophyte assemblages in a Mediterranean lagoon (Thau lagoon, Southern France). Ecological Modelling 193: 119-131.
Zaldivar J.M., Solidoro C., Tsirtsis G., Mouillot D. (2006). Special Issue on Southern European coastal lagoons - Preface. Ecological Modelling 193: 1-3.
Zhang H., Wang J., Yuan J., Li L., Zhang J., Bonami J.R., Shi Z. (2006). Quantitative relationship of two viruses (MrNV and XSV) in White Tail Disease of Macrobrachium rosenbergii de Man. Diseases of Aquatic Organisms 71: 11-17.
2005
Bec B., Husseini-Ratrema J., Collos Y., Souchu P., Vaquer A. (2005). Phytoplankton seasonal dynamics in a Mediterranean coastal lagoon: emphasis on the picoeukaryote community. Journal of æPlankton Research 27: 881-894.
Berrebi P., Cattaneo-Berrebi G., Valade P., Ricou J.F., Hoareau T. (2005). Genetic homogeneity in eight freshwater populations of Sicyopterus lagocephalus, an amphidromous gobiid of La Réunion island. Marine Biology 148(1):179-188.
Berrebi P., Rodriguez P., Tomasini J.-A., Cattaneo-Berrebi G., Crivelli A.J. (2005). Differential distribution of the two cryptic species, Pomatoschistus microps and P. marmoratus, in the lagoons of southern France, with an emphasis on the genetic organisation of P. microps. Estuarine, Coastal and Shelf Science. 65: 708-716.
Berrebi, P., Boissin, E., Fang, F., Cattaneo-Berrebi, G. (2005). Intron polymorphism (EPIC-PCR) reveals phylogeographic structure of Zacco platypus in China -a possible target for aquaculture development. Heredity, 94: 589-598.
Bettarel Y., Sime-Ngando T., Amblard C., Bouvy M., Arfi R. (2005). Low consumption of virus-sized particles by heterotrophic nanoflagellates in two lakes of the French Massif Central. Aquatic Microbial Ecology 39: 205-209.
Bonami J.R, Shi Z, Qian D, Sri-Widada J. (2005). White tail disease of the giant freshwater prawn Macrobrachium rosenbergii: separation of the associated virions and characterization of MrNV as a new type of nodavirus. Journal of Fish Diseases 28: 23-31.
Collos Y., Descolas-Gros C., Mornet F. (2005). Grazing affects carbon fixation patways by phytoplankton in coastal marine ecosystems. Chemistry and Ecology 21 (6): 503-509.
Collos Y., Husseini-Ratrema J., Bec B., Vaquer A., Lam Hoai T., Rougier C., Pons V., Souchu P. (2005). Pheopigment dynamics, zooplankton grazing rates and the autumnal ammonium peak in a Mediterranean lagoon Hydrobiologia 550: 83-93.
Collos Y., Vaquer, A., Souchu, P. (2005). Acclimation of nitrate uptake by phytoplankton to high substrate levels. Journal of Phycology. 41: 466-478.
Darnaude AM. (2005). Fish ecology and terrestrial carbon use in coastal areas. Journal of Animal Ecology 74: 864-876.
De Wit R. (2005). Do all ecosystems maximise their distance with respect to thermodynamic equilibrium ? A comment on the "Ecological Law of Thermodynamics" (ELT) proposed by Sven Erik Jørgensen. Scientia Marina 69: 427-434.
De Wit R., Falcón L., Charpy-Roubaud C. (2005). Heterotrophic dinitrogen fixation (acetylene reduction) in phosphate-fertilised Microcoleus chthonoplastes microbial mat from the hypersaline inland lake "la Salada de Chiprana" (NE Spain). Hydrobiologia 534: 245-253.
De Wit R., Leibreich J., Vernier F., Delmas F., Beuffe H., Maison Ph., Chossat J.-C., Laplace-Treyture C., Laplana R., Clavé V., Torre M., Auby I. Trut G., Maurer D., Capdeville P. (2005). Relationship between land-use in the agro-forestry system of les Landes, nitrogen loading to and risk of macro-algal blooming in the Bassin d'Arcachon coastal lagoon (SW France). Estuarine and Coastal Shelf Science 62: 453-465.
Denaro R., D'Auria G., Di Marco G., Genovese M., Troussellier M., Yakimov M.M., Giuliano L. (2005). Assessing T-RFLP suitability for the description of bacterial community structure and dynamics in oil-polluted marine environments. Environmental Microbiology 7 :78-87.
Deviller G., Palluel O., Aliaume C., Asanthi H., Sanchez W., Franco Nava M. A., Blancheton J-P., Casellas C. (2005). Impact assessment of various rearing systems on fish health using multibiomarker response and metal accumulation. Ecotoxicology and Environmental Safety 61:89-97.
Di Leonardo A, Bonnichon V, Roch Ph, Parrinello N, Bonami J-R. (2005). Comparative WSSV infection routes in the shrimp genera Marsupenaeus and Palaemon. Journal Fish and Disease 28: 565-569.
Durand J-D, Tine M, Panfili J, Thiaw OT, Lae R. (2005). Impact of glaciations and geographic distance on the genetic structure of a tropical estuarine fish, Ethmalosa fimbriata (Clupeidae, S. Bowdich, 1825). Molecular Phylogenetics and Evolution 36:277-287.
Hoareau T, Lecomte-Finiger R, Grondin HP, Conand C., Berrebi P. (2005). Oceanic larval life and genetic structure of La Réunion "bichiques", amphidromous gobiids post-larvae. Marine Ecology Progress Series 333 : 303-308.
Jacquet S, Briand JF, Leboulanger C, Oberhaus L, Paolini G, Druart JC, Anneville O, Humbert JF. (2005). The proliferation of the toxic cyanobacterium Planktothrix rubescens following restoration of the largest natural French lake (Lake Bourget). Harmful Algae 4: 651-672.
Jug T., Berrebi P., Snoj A. (2005). Distribution of non-native trout in Slovenia and their introgression with native trout populations as observed through microsatellite DNA analysis. Biological Conservation 123 (3): 381-388.
Keith P., Galewski T., Cattaneo-Berrebi G., Hoareau T., Berrebi P. (2005). Ubiquity of Sicyopterus lagocephalus (Teleostei: Gobioidei) and phylogeography of the genus Sicyopterus in the Indo-Pacific area inferred from mitochondrial cytochrome b gene. Molecular Phylogenetics and Evolution, 37: 721-732.
Krasnov B..R., Shenbrot G.I., Mouillot D., Khokhlova I.S., Poulin R. (2005) What are the factors determining the probability of discovering a flea species (Siphonaptera)? Parasitology Research 97: 228-237.
Krasnov B.R., Mouillot D., Shenbrot G.I., Khokhlova I.S., Poulin R. (2005). Abundance patterns and coexistence processes in communities of fleas parasitic on small mammals. Ecography 28: 453-464.
Krasnov B.R., Mouillot D., Shenbrot G.I., Khokhlova I.S., Poulin R. (2005). Covariance in species diversity and facilitation among non-interactive parasite taxa: all against the host. Parasitology 131: 557-568.
Krasnov B.R., Poulin R., Shenbrot G.I., Mouillot D., Khokhlova I.S. (2005). Host specificity and geographic range in haematophagous ectoparasites Oikos 108 (3): 449-456.
Krasnov B.R., Shenbrot G.I., Mouillot D., Khokhlova I.S., Poulin R. (2005). Spatial variation in species diversity and composition of flea assemblages in small mammalian hosts: geographical distance or faunal similarity ? Journal of Biogeography 32 (4): 633-644.
Maillo P., Vich M., Salvado H., Marques A., Gracia M. (2005). Parasites of Anguilla angulla (L) from three coastal lagoons of the River Ebro delta (Western Mediterranean). Acta Parasitologica 50: 156-160.
Mason N.W.H., Mouillot D., Lee W.G, Wilson J.B. (2005). Functional richness, functional evenness and functional divergence: proposed primary components of functional diversity. Oikos 111: 112-118.
Mermillod-Blondin F., François-Carcaillet F., Rosenberg R. (2005). Biodiversity of benthic invertebrates and organic matter processing in shallow marine sediments : an experimental study. Journal of Experimental Marine Biology and Ecology, 315: 187-209.
Metaxa E., Deviller G., Pagan P., Aliaume C., Casellas C., Blancheton J. P. (2005). High rate algal pond treatment for water reuse in a marine fish recirculation system: water purification and fish headline Aquaculture 252(1): 92-101.
Morales Nin B, Panfili J. (2005). Seasonality in the deep sea and tropics revisited: what can otoliths tell us? Marine and Freshwater Research 56:585-598.
Mouillot D., Gaillard E., Aliaume C., Verlaque M., Belsher T., Troussellier M., Do Chi T. (2005). Ability of taxonomic diversity indices to discriminate coastal lagoon environments based on macrophytes communities. Ecological Indicators 5 : 1-17.
Mouillot D., George-Nascimento M., Poulin R. (2005). Richness, structure and functioning in metazoan parasite communities. Oikos 109 (3): 447-460.
Mouillot D., Laune J., Tomasini J.A., Aliaume C., Brehmer P., Dutrieux E., Do Chi T. (2005). Taxonomic diversity of fish, zoobenthic and macrophyte communities along an eutrophication gradient in Mediterranean coastal lagoons. Hydrobiologia 550: 121-130.
Mouillot D., Mason W.H.N., Dumay O., Wilson J.B.. (2005). Functional regularity: a neglected aspect of functional diversity. Oecologia 142 (3): 353-359.
Mouillot D., Šimková A., Morand S., Poulin R. (2005) Parasite species coexistence and limiting similarity: a multiscale look at phylogenetic, functional and reproductive distances. Oecologia 146: 269-278.
Mouillot D., Stubbs W., Faure M., Dumay O., Tomasini A., Wilson J.B., Do Chi T. (2005). Niche overlap estimates based on quantitative functional traits: a new family of non-parametric indices. Oecologia 145: 345-353.
Mouillot F., Ratte J.P., Joffre R.., Mouillot D., Rambal S. (2005). Rates and patterns of long term changes in a Mediterranean landscape. Landscape Ecology 20: 101-112.
Panfili J., Durand J-D., Diop K., Gourene B., Simier M. (2005). Fluctuating asymmetry in fish otoliths and heterozygosity in stressful estuarine environments (West Africa). Marine and Freshwater Research 56:505-516.
Pillai D., Nair Mc., Salin Kr., Marques A., Sri Widada J., Bonami J-R. (2005). Gross signs and histopathology of the Balloon Disease (or Branchiostegal Blister Disease): an idiopathic disease of farmed Macrobrachium rosenbergii (De Man). Journal and Fish Diseases 28: 473-478.
Poulin R., Krasnov B.R., Shenbrot G.I., Mouillot D., Khokhlova I.S. (2005). Evolution of host specificity in fleas: is it directional and irreversible? International Journal for Parasitology. 36: 185-191.
Poulin R., Mouillot D. (2005). Combining phylogenetic and ecological information into a new index of host specificity. Journal of Parasitology. 91: 511-514.
Poulin R., Mouillot D. (2005). Host specificity and the probability of discovering species of helminth parasites. Parasitology. 130: 709-715.
Pringault O., de Wit R., Camoin G. (2005). Irradiance regulation of photosynthesis and respiration in modern marine microbialites built by benthic cyanobacteria in a tropical lagoon (New Caledonia). Microbial Ecology 149 : 604-616.
Ramos Miranda J., Quiniou L., Flores-Hernández D., Do-Chi T., Ayala-Pérez L., Sosa-López A. (2005). Spatial and temporal changes in the nekton communities of the Terminos Lagoon, Campeche, Mexico. Journal of Fish Biology 66 : 513-530.
Ramos-Miranda J., Mouillot D., Flores-Hernández, Sosa-Lopez A., Do Chi T., Amado-Ayala L. (2005). Changes in four complementary facets of fish diversity in a tropical coastal lagoon after 18 years: a functional interpretation. Marine Ecology Progress Series, 304: 1-13.
Rougier C., Pourriot R., Lam-Hoai T., Guiral D. (2005). Ecological patterns of the rotifer communities in the Kaw River estuary (French Guiana). Estuarine and Coastal Shelf Science 63 : 83-91.
Sargian P., Mostajir B., Chatila K., Ferrayra G., Pelletier E., Demers S. (2005). Non-synergistic effects of Water Soluble Crude Oil And Enhanced Ultraviolet-B Radiation On A Natural Planktonic Assemblage. Marine Ecology Progress Series 294: 63-77.
Sargian P., Pelletier E., Mostajir B., Ferrayra G., Demers S. (2005). TBT toxicity on a natural planktonic assemblage exposed to enhanced ultraviolet-B radiation. AquaticToxicology 73: 299-314.
Shi Z., Wang H., Zhang J., Xie Y., Li L., Chen X., Edgerton B.F., Bonami J-R. (2005). Response of crayfish, Procambarus clarkii, haemocytes infected by white spot syndrome virus. Journal of Fish Diseases 28 : 151-156.
Sosa-López A., Mouillot D., Do-Chi T., Ramos-Miranda J. (2005). Ecological indicators based on trophic rank distribution of a tropical fish community. ICES Journal of Marine Science, 62: 453-458.
Troussellier M., Got P., Mboup M., Corbin D., Guiliano L., Capello S., Bouvy M. (2005). Daily bacterioplankton dynamic in a sub-saharan estuary (Senegal River, West Africa): a mesocosm study. Aquatic Microbial Ecology 40: 13-24.
Vizzini S., Savona B., Do Chi T. , Mazzola A. (2005). Spatial variability of stable carbon and nitrogen isotope rations in a Mediterranean coastal lagoon. Hydrobiologia 550:73-82.
Yoganandhan K., Sri Widada J., Bonami J.R., Sahul Hameed A.S. (2005) Simultaneous detection of Macrobrachium rosenbergii nodavirus and extra small virus by a single tube, one-step multiplex RT-PCR assay. Journal of Fish Diseases 28: 65-69.
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